PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G208400.1.p
Common NameMADS2, PRUPE_ppa010391mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28533.4 Da    PI: 8.6127
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G208400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.6e-32959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Prupe.5G208400.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
                        79***********************************************96 PP
2K-box102.55.4e-348317310100
               K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                           +++++++qe+ kLk+++e Lq++qR+llGedL +L+ keL+qLe+qLe sl++iRs+K++++l+q+ +lq+ke++l e+nkaLr+klee
  Prupe.5G208400.1.p  83 PVNETQNSYQEYLKLKARVEVLQQSQRNLLGEDLAPLNTKELEQLEHQLEASLNQIRSTKTQFMLDQLCDLQNKEQMLVEANKALRRKLEE 173
                         45778***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.165161IPR002100Transcription factor, MADS-box
CDDcd002652.37E-46278No hitNo description
SuperFamilySSF554556.8E-33282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014869.8E-3084171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.07787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSS  60
MSMLKTLEKY QRCSYGSLEA NRPVNETQNS YQEYLKLKAR VEVLQQSQRN LLGEDLAPLN  120
TKELEQLEHQ LEASLNQIRS TKTQFMLDQL CDLQNKEQML VEANKALRRK LEETSGQAPP  180
LLAWEAAGHG NNNVQHTGLP HHPHSQGFFH PLGNNSTSQI GYTPLGSDHH EQMNVGNHGQ  240
HVNGFIPGWM L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-32751711101Developmental protein SEPALLATA 3
4ox0_B2e-32751711101Developmental protein SEPALLATA 3
4ox0_C2e-32751711101Developmental protein SEPALLATA 3
4ox0_D2e-32751711101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.17660.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G208400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1023690.0DQ102369.1 Prunus persica MADS box protein (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209505.10.0MADS-box protein CMB1
SwissprotQ8LLR21e-120MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLQ4F8B30.0Q4F8B3_PRUPE; MADS box protein
STRINGEMJ107040.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-105MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]