PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G208300.1.p | ||||||||
Common Name | PRUPE_ppa003644mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 560aa MW: 61263.1 Da PI: 7.4377 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.6 | 1.3e-41 | 177 | 252 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Prupe.5G208300.1.p 177 CQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGREQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 252 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.1E-34 | 172 | 238 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.368 | 174 | 251 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.18E-38 | 175 | 255 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.3E-32 | 177 | 250 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MESWSRISEG KGFVSEETIS HTDSFSRSRN TLMGWELKIP CTFGSNVLVS GQQAIESQGF 60 GELGFPEMMG KHFSNNPIRD VLSGKVYGER STNTTSMATP NLFSGEDESS SKLSSSIVDS 120 NSRDSSLIDL KLGRLADNRD FHDSKFSKGH PILSSSESST PPKRMRVSGL YSQTAYCQVY 180 GCNKDLSSSK DYHKRHKVCE AHSKTAKVIV NGREQRFCQQ CSRFHLLAEF DDGKRSCRKR 240 LAGHNERRRK PQVGIHSGRA GRLLQSYNGS RFQDNMLTTA SFICQEILPS GILDAENYGT 300 NDWCRHLKVE DATHYRPLSG VPVTNGHLPL KPAFPSYDIG KRYPPFHDNG TNPLTGNIII 360 ENGSQYSHDM RGLNSGSHSM FHETTTLGSE DFNVFNTAST VHGLSGISDS GCALSLLSSQ 420 SQKSSSHLSG IPMASPLVMP DRHTNYRLVQ GSENLIGGCS HASSSGVSNK FPSSGMNSGA 480 GTHLGPILLC NGSDTDDFGI SDGIFQGSDF VNAKDRLSCE DGTTIDLLQL SSQLQRVEDQ 540 RQSMQVKQES DAFCCLRIT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-28 | 177 | 250 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G208300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 5e-46 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 5e-46 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209100.1 | 0.0 | teosinte glume architecture 1 isoform X1 | ||||
Refseq | XP_020418904.1 | 0.0 | teosinte glume architecture 1 isoform X1 | ||||
TrEMBL | M5W9A5 | 0.0 | M5W9A5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10299 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-50 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G208300.1.p |
Entrez Gene | 18776145 |