PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G206400.1.p | ||||||||
Common Name | PRUPE_ppa014630mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 382aa MW: 42184.1 Da PI: 8.0724 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.3 | 2.9e-30 | 59 | 180 | 3 | 115 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec.eaesssssasnss 86 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + i++l+ ++ ++ +++ ++++s+ ++++s+ Prupe.5G206400.1.p 59 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDVTEDDIDKLPPLQVPHGfahqfhQQMlNPHHSHDQGHQSN 149 78*************************************************************5555533222222244444444444344 PP TCP 87 sg.........kaaksaakskksqksaasalnlakesr 115 ++ + s++ ++++++++ + ++ Prupe.5G206400.1.p 150 NSlaaapffdvN-------SSFMEADHQAHQRSSTTTN 180 446655555432.......2222222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-28 | 60 | 198 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.884 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MISNSREKGF QAKQEGHNNT NNDGNSSNFN KASSSSTTTS RQWSGFRNPR IVRVSRTFGG 60 KDRHSKVSTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLDV TEDDIDKLPP 120 LQVPHGFAHQ FHQQMLNPHH SHDQGHQSNN SLAAAPFFDV NSSFMEADHQ AHQRSSTTTN 180 VGDRKGKSIK THDEQDDDDQ NHHQDGNIGG GQLLAQKLFP QGNHPSSIPG LLNNAMAYNY 240 YHNYSEPSSL SLSQFGGHGF PPVPQIDHHS HMMSNALSFS TSMPSGSQLF FCPSTATPSL 300 FGPYPPYITN PVVERGTTTS EPRSQANHFQ FLSSSNSPNL LPNALMSSLQ SLKSYPTSVN 360 PKQLHSNSQD NNGSQPNKDH N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-19 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-19 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G206400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209843.1 | 0.0 | transcription factor TCP5 | ||||
TrEMBL | M5WBB4 | 0.0 | M5WBB4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ11042 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-49 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G206400.1.p |
Entrez Gene | 18776591 |