PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G201200.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 443aa    MW: 47333.2 Da    PI: 9.0352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G201200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066155174221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C  C+ s+s+k+n++ Hi 
  Prupe.5G201200.3.p 155 RCDVCNLSCSSKENYEAHIL 174
                         6*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.57E-9151185No hitNo description
SMARTSM004512.7E-4151185IPR003604Zinc finger, U1-type
SMARTSM003550.6154178IPR015880Zinc finger, C2H2-like
PfamPF128743.6E-6155178No hitNo description
SuperFamilySSF576671.11E-7240271No hitNo description
SMARTSM004510.027240274IPR003604Zinc finger, U1-type
SMARTSM003550.68243267IPR015880Zinc finger, C2H2-like
PfamPF128744.1E-8245267No hitNo description
SuperFamilySSF576675.06E-10302338No hitNo description
SMARTSM004517.1E-6303337IPR003604Zinc finger, U1-type
SMARTSM0035542306330IPR015880Zinc finger, C2H2-like
PfamPF128747.9E-8307330No hitNo description
SMARTSM004511.0E-4392426IPR003604Zinc finger, U1-type
SMARTSM003551.8395419IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.67E-9395426No hitNo description
PfamPF128742.5E-8396419No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MCANPTPSST NHAKIPSYTN PNSNFTTKSH SQMFNPSQDS TNLTYHIPYQ SNTINPNSNK  60
RWLFPPPVFP SAVAFDPALR PPGTEPNANS GSYSWTHVVF QAQTPFVEDP NAGSQNGAIQ  120
QAEPIGHEAS IKFLNESLLV PTTSNSLWNS NGTNRCDVCN LSCSSKENYE AHILGKKHQK  180
KIRMQYNPTA AASNVLNNIS LPSQTSSVGG QVIFGGSGVA AGVELETKRR KVVNGGAADD  240
SMVVCTICNV VCNSQEVYIK HLAGKRHKAQ ASLVAPNVGS YFAALQSEVT GIWNKDPNKI  300
KLVQSAWCEV CKVSCNSNDT YIKHLVGKKH QKNLEQLEKL KNDGSASTSN VPSAATNAII  360
GPMENLGAKG SQPEEDLETK KRKIISGGAA AGAVRTCTVC NVVCNSQTVF NSHLAGQKHA  420
AMVKKQAEVG VAIRASQQIT AS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G201200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420236.10.0zinc finger RNA-binding protein
TrEMBLA0A251PB320.0A0A251PB32_PRUPE; Uncharacterized protein
STRINGXP_008239875.10.0(Prunus mume)