PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G196100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 311aa    MW: 34566.8 Da    PI: 7.363
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G196100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.5e-191562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd +l+d ++++G g+W++ +++ g++R++k+c++rw++yl
  Prupe.5G196100.2.p 15 RGPWTPEEDRKLLDFIQLHGHGSWSSLPQKAGLKRCGKSCRLRWRNYL 62
                        89*********************************************7 PP
2Myb_DNA-binding53.36.3e-1768113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++  Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
  Prupe.5G196100.2.p  68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHL 113
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0721062IPR017930Myb domain
SuperFamilySSF466895.87E-3112109IPR009057Homeodomain-like
SMARTSM007171.9E-151464IPR001005SANT/Myb domain
PfamPF002491.4E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-241669IPR009057Homeodomain-like
CDDcd001671.58E-121762No hitNo description
PROSITE profilePS5129425.13763117IPR017930Myb domain
SMARTSM007178.9E-1767115IPR001005SANT/Myb domain
PfamPF002491.9E-1568113IPR001005SANT/Myb domain
CDDcd001673.54E-1270113No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGKSTCFAAA SGIKRGPWTP EEDRKLLDFI QLHGHGSWSS LPQKAGLKRC GKSCRLRWRN  60
YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPKR TDNEIKNYWN THLKKRLAKI  120
GFDPVTHKPK TAILGSANGD PKKLSKESEL HKSSAHQLLH DQTASLTHDH LHHQFAPLVP  180
QCLDILRASA WESLISMSTK SSSSDADAPT SHINGGQNHV SFGYHHDVHE HGVNIISNFE  240
GPTSDHQFSS MTECDDSRAM SSMTTGSLGL NELIGQYCGN ECSELFEALQ QYMGFEVEVG  300
DAWTSLEQLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26151177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G196100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1506765e-51KJ150676.1 Prunus perscica disrupted R2R3-MYB transcription factor (PpeMYB25), partial sequence; and Ty-copia retrotransposon, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210715.20.0myb-related protein Hv1
SwissprotQ9LXF13e-74MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A251PAW50.0A0A251PAW5_PRUPE; Uncharacterized protein
STRINGXP_008239919.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-74myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]