PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G196100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 36829.3 Da PI: 7.3817 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+d ++++G g+W++ +++ g++R++k+c++rw++yl Prupe.5G196100.1.p 15 RGPWTPEEDRKLLDFIQLHGHGSWSSLPQKAGLKRCGKSCRLRWRNYL 62 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 7e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+++l Prupe.5G196100.1.p 68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.072 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.98E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.137 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.71E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGKSTCFAAA SGIKRGPWTP EEDRKLLDFI QLHGHGSWSS LPQKAGLKRC GKSCRLRWRN 60 YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPKR TDNEIKNYWN THLKKRLAKI 120 GFDPVTHKPK TAILGSANGD PKKLSNLSHI AQWESARLQA EARLSKESEL HKSSAHQLLH 180 DQTASLTHDH LHHQFAPLVP QCLDILRASA WESLISMSTK SSSSDADAPT SHINGGQNHV 240 SFGYHHDVHE HGVNIISNFE GPTSDHQFSS MTECDDSRAM SSMTTGSLGL NELIGQYCGN 300 ECSELFEALQ QYMGFEVEVG DAWTSLEQLL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. | |||||
UniProt | Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G196100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ150676 | 9e-62 | KJ150676.1 Prunus perscica disrupted R2R3-MYB transcription factor (PpeMYB25), partial sequence; and Ty-copia retrotransposon, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007210715.2 | 0.0 | myb-related protein Hv1 | ||||
Swissprot | Q9LE63 | 4e-88 | MY106_ARATH; Transcription factor MYB106 | ||||
Swissprot | Q9LXF1 | 4e-88 | MYB16_ARATH; Transcription factor MYB16 | ||||
TrEMBL | A0A251PCF1 | 0.0 | A0A251PCF1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239919.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF835 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 5e-90 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G196100.1.p |
Publications ? help Back to Top | |||
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