PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G185900.1.p
Common NamePRUPE_ppa008495mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 330aa    MW: 36763.2 Da    PI: 4.4182
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G185900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-1994148357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         k++++t +q++ Le+ F +++++  e++  LAk lgL+ rqV +WFqNrRa++k+
  Prupe.5G185900.1.p  94 KKRRLTVDQVQFLEKSFDMENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKN 148
                         56689************************************************95 PP
2HD-ZIP_I/II127.65.3e-4194183291
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         kkrrl+ +qv++LE+sF++e+kLeperK  la++Lglqprqva+WFqnrRAR+k+kqlEkdye+L+++y++lk++ e+L ke+e+L++e+
  Prupe.5G185900.1.p  94 KKRRLTVDQVQFLEKSFDMENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYEVLQANYNSLKADCESLAKENEKLKSEV 183
                         9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1980151IPR009057Homeodomain-like
PROSITE profilePS5007116.63389149IPR001356Homeobox domain
SMARTSM003897.0E-1991153IPR001356Homeobox domain
CDDcd000863.96E-1892150No hitNo description
PfamPF000462.2E-1694148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1996156IPR009057Homeodomain-like
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PfamPF021831.2E-16149190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAGGRVYSGG ASSSSLSVLL QNQRGPCASE PLDSLFLSGS SNSSSASPFL GSRSMVSFED  60
VRGGNGSNRS LFHQYEHEDN GDDDLDEYFH QPGKKRRLTV DQVQFLEKSF DMENKLEPER  120
KILLAKDLGL QPRQVAIWFQ NRRARWKNKQ LEKDYEVLQA NYNSLKADCE SLAKENEKLK  180
SEVLVLSEKL PHKEKESGTS ELSDTNKVSQ EPTQNPTADS LSECEVSKVS AVASKQEDLS  240
SGKSDIFDSD SPHYTDGVHS SILEPGDSSY VFEPDQSDLS QDEEDNLSKS LLPPYIFPKL  300
EDVDYSDTPV NSCNFGFPVE DHAFWSWSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARWKNKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.193150.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G185900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209345.10.0homeobox-leucine zipper protein HAT5
TrEMBLM5W9Z90.0M5W9Z9_PRUPE; Uncharacterized protein
STRINGEMJ105440.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-44homeobox 1