PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G183200.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 27479.5 Da PI: 6.303 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33 | 1.1e-10 | 160 | 207 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Prupe.5G183200.4.p 160 SHSLAERARREKISERMKLLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 207 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.98E-9 | 154 | 211 | No hit | No description |
SuperFamily | SSF47459 | 7.46E-18 | 154 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.682 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-18 | 156 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-8 | 160 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-10 | 162 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDPPLINESS FSAANPSAYS LAEIWPFSGE PGGSGGGLGL RMGSLGGLGD SSVNRDGSLE 60 ESTVTEQSGG GGGRKRRDVS SEDESSKLVS TSSASGLKDS SGKRMKLAGS QNENGGSKAE 120 VEESSAAGDN KPAEQSTKPS EPPKQDFIHV RARRGQATDS HSLAERARRE KISERMKLLQ 180 DLVPGCNKVI GKALVLDEII NYIQSLQHQV EFLSMKLEAV NSRMNLNPTI EAFPSKDLFN 240 LRDTSRNVNV CQPSSLGK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.4505 | 2e-44 | fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G183200.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689421 | 0.0 | KP689421.1 Prunus pseudocerasus isolate Unigene13496 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419164.1 | 0.0 | transcription factor bHLH79 isoform X2 | ||||
Swissprot | Q9LV17 | 3e-82 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A251PAF5 | 0.0 | A0A251PAF5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10654 | 1e-170 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 4e-81 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G183200.4.p |
Publications ? help Back to Top | |||
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