PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G172400.1.p | ||||||||
Common Name | PRUPE_ppa026791mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 460aa MW: 52223.9 Da PI: 5.9236 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 187 | 233 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+q+G + W+ Ia++++ gR +kqc++rw+++l Prupe.5G172400.1.p 187 KGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 233 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.7e-18 | 239 | 281 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ Prupe.5G172400.1.p 239 KDTWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 281 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 31.035 | 182 | 237 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.73E-32 | 184 | 280 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-17 | 186 | 235 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-29 | 188 | 241 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.0E-19 | 190 | 247 | No hit | No description |
CDD | cd00167 | 1.56E-16 | 190 | 233 | No hit | No description |
SMART | SM00717 | 8.9E-18 | 238 | 286 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.269 | 238 | 288 | IPR017930 | Myb domain |
CDD | cd00167 | 3.12E-14 | 241 | 284 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 242 | 286 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MMKLYNMKDE FPFEASSSSS KGNYNYLQDF HHLDHQFQVN GSSSNPMFGV QNPCFDPYND 60 TTYTYEASTT DVKFYECKSL NAETNMGHGQ VLDNFQSGSG SLNFPTHTSN PLDHLMGSSH 120 RSATNFLPLD YQDIKPMNFV VPDEVSCINN TDQNGYYKKF GMNGKSRVST LTRGSTYKGR 180 KKSNVVKGQW TIEEDRLLIQ LVEQYGVRKW SHIAQMLPGR IGKQCRERWH NHLRPDIKKD 240 TWSEEEDKIL IQAHAEIGNK WAEIAKRLPG RTENSIKNHW NATKRRQYSK RKCRSKYPRG 300 SLLQEYIKSL NLDSTGSSTG RQRKNKSGNN SATSPNNMAP SSTESHTQQT QNNVGFSCAN 360 DRLVPNYDFN EDPDFCFDDN MFQEGCSIDS LLDDIPCAPV LGENNDDFDG KIMAQASVVA 420 DEEKDFEMEM QVDVDVGPVM ESSEVKKELD LVEMISQVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 8e-47 | 185 | 287 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 8e-47 | 185 | 287 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G172400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211144.2 | 0.0 | transcription factor MYB98 | ||||
Swissprot | Q9S7L2 | 1e-104 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A251PBA3 | 0.0 | A0A251PBA3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12343 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-106 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G172400.1.p |
Entrez Gene | 18777434 |
Publications ? help Back to Top | |||
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