PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G159100.2.p

Common Name

PRUPE_ppa004690mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 428aa MW: 48062.7 Da PI: 4.8892

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G159100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.6e-13	157	179	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ Prupe.5G159100.2.p 157 EDCSYYLKTGSCKFGSNCKFNHP 179 89********************9 PP
2	zf-CCCH	29.7	1.1e-09	201	225	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG C+++H++ Prupe.5G159100.2.p 201 QTECKYYLRSGGCKYGKACRYSHSK 225 679********************95 PP
3	zf-CCCH	34.9	2.7e-11	246	270	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Cky ++C+F+H+ Prupe.5G159100.2.p 246 GERECPYYMRNGSCKYASNCRFNHP 270 5799********************9 PP
4	zf-CCCH	22.1	2.6e-07	386	407	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f+rtG Ck+ ++Ck++H++ Prupe.5G159100.2.p 386 CSYFLRTGDCKFKSNCKYHHPK 407 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.26E-6	152	181	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-6	153	180	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.971	153	181	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-10	157	179	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-5	159	178	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-5	198	225	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.793	198	226	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-7	201	225	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.01E-5	202	226	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-5	204	225	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-5	244	271	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.502	244	272	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.81E-6	245	271	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-8	246	270	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-4	250	269	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.6E-4	380	407	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	380	408	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-5	384	408	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.6E-5	386	407	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MEVSEAISVP PNLDANNNHH IDEHHQPSHS ELVFLPSSSD PDPAPSDFDH AVLDELQKLD 60 LKEKEEEEEG EDHLDEFQKL DLKEKEDAKE EEEEEDVEKK SSNGRETENE NENENESERQ 120 SEQSDGGENQ SEDGGDAEKK AEESRRRYQY PVRPEAEDCS YYLKTGSCKF GSNCKFNHPV 180 KRKGSKDKVK EREEFGDKTG QTECKYYLRS GGCKYGKACR YSHSKGKPSV APVVELNFLG 240 LPIRLGEREC PYYMRNGSCK YASNCRFNHP DPTAAGGSDP ASAFGNGGPA SLQGAPQSTV 300 APWSAPRSLN ETPPYMPMMI PPSQGVPSQN TEWNGYQAPA YLPERSMPAR QPYLMNNSMT 360 ETNIYKQYPQ HQQAEEFPER PGQPFCSYFL RTGDCKFKSN CKYHHPKTQT AVSPQCALSD 420 KGLPLRP*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MEVSEAISVP PNLDANNNHH IDEHHQPSHS ELVFLPSSSD PDPAPSDFDH AVLDELQKLD  60
LKEKEEEEEG EDHLDEFQKL DLKEKEDAKE EEEEEDVEKK SSNGRETENE NENENESERQ  120
SEQSDGGENQ SEDGGDAEKK AEESRRRYQY PVRPEAEDCS YYLKTGSCKF GSNCKFNHPV  180
KRKGSKDKVK EREEFGDKTG QTECKYYLRS GGCKYGKACR YSHSKGKPSV APVVELNFLG  240
LPIRLGEREC PYYMRNGSCK YASNCRFNHP DPTAAGGSDP ASAFGNGGPA SLQGAPQSTV  300
APWSAPRSLN ETPPYMPMMI PPSQGVPSQN TEWNGYQAPA YLPERSMPAR QPYLMNNSMT  360
ETNIYKQYPQ HQQAEEFPER PGQPFCSYFL RTGDCKFKSN CKYHHPKTQT AVSPQCALSD  420
KGLPLRP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G159100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020419600.1	0.0	zinc finger CCCH domain-containing protein 43 isoform X2
Swissprot	Q9STM4	1e-113	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A251P990	0.0	A0A251P990_PRUPE; Uncharacterized protein
STRING	EMJ11136	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-112	C3H family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G159100.2.p
Entrez Gene	18776934

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]