PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G158500.25.p

Common Name

PRUPE_ppa014619mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 259aa MW: 28401.9 Da PI: 8.4079

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G158500.25.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	57	81	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Prupe.5G158500.25.p 57 GEKDCSCYMRTLSCMYGTKCRFNHP 81 7789********************9 PP
2	zf-CCCH	22.1	2.7e-07	188	214	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r+G Ck+ ++Ck++H++ Prupe.5G158500.25.p 188 PGQPVCLYFSRSGDCKHKSNCKYHHPK 214 57899********************96 PP
3	zf-CCCH	24.6	4.5e-08	232	256	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++++G+C+ G+ CkF+H+ Prupe.5G158500.25.p 232 GQNICTQYSAYGICNSGPACKFNHP 256 6789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.188	55	83	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.98	55	82	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.06E-5	57	82	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.61	187	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0011	187	214	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.5E-5	189	214	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-5	190	217	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.005	230	258	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.0E-4	230	257	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.81E-7	230	255	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	232	256	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MKEREGLAEK PGKTEFKNYF RSGGRKSGNA CALNPRRGEA SVAPILENFM GLPIRPGEKD 60 CSCYMRTLSC MYGTKCRFNH PDPTPAGESD PPSGNGNGGL ASLQGASSAT AARWYAPISL 120 NNAPLYEPIM IPPSQEFPSQ NTEWNGYQAT ERSMPAPPPY VMNHSVTETN TYEQYPQQKQ 180 VQEFPERPGQ PVCLYFSRSG DCKHKSNCKY HHPKNQTAVP PSCDKGLLLR PGQNICTQYS 240 AYGICNSGPA CKFNHPSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G158500.25.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020419586.1	0.0	zinc finger CCCH domain-containing protein 43 isoform X5
Swissprot	Q9STM4	9e-73	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A251P954	0.0	A0A251P954_PRUPE; Uncharacterized protein
TrEMBL	A0A251P963	0.0	A0A251P963_PRUPE; Uncharacterized protein
STRING	EMJ11040	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	4e-75	C3H family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G158500.25.p
Entrez Gene	18777998

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]