PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158500.20.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 890aa    MW: 98441.5 Da    PI: 7.2482
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158500.20.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06688712226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C+ ++rt  C yG +C+F+H+
  Prupe.5G158500.20.p 688 GEKDCSCYMRTLSCMYGTKCRFNHP 712
                          6789********************9 PP
2zf-CCCH201.2e-06819845127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C +f+r+G Ck+ ++Ck++H++
  Prupe.5G158500.20.p 819 PGQPVCLYFSRSGDCKHKSNCKYHHPK 845
                          57899********************96 PP
3zf-CCCH22.52e-07863887226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++ +C  ++++G+C+ G+ CkF+H+
  Prupe.5G158500.20.p 863 GQNICTQYSAYGICNSGPACKFNHP 887
                          6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.98686713IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.188686714IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011818845IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61818846IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6861886IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4861888IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005861889IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-5863887IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLDKI RKLGPALLDK IRKFDPDVLD  60
ELRKIDPVLL DGLRKIHPTL LDELRKVDSA VLQEMQLEPA EWDPVIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTAKENE NGNQKTQSEE TDGGGGGENK NDNGGEVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NRKNNQNYFR SGGQHPNLYA SPNPGNDDVL SPNPGKVDSV  240
LQVDPTELDP AIIDAICKFS LKGKEEGEQE VEVSCSTPET EIRNKNGNKR QSEERDGGGG  300
VENKNENGGQ VEKKVDDGRS RRHHYPVRPP GAGDSSHNLK TGTHKFGSNC KFNRTRGSKN  360
NQVSKDKMKE REGLAEKPGQ TECKNYFRSG GQRQNRYAPQ NPGDNDSFSP NSDVSPNPGN  420
DGVLPQNPGK DDILPQNHGD TDCDLATLRE ILRHKTALLG IIRKLDAGLF GDIQKIDPAV  480
LHEMQADPAE WDPAIIDAIC KLSLEEKDES EEEVEVSCGG PETEIRNENR YKTQSKERDG  540
GGGENKNENG GEVQKKLDEE RSRRHHYPVR PPGAGDSSHN LKTGTHQFGS NCKFNLTHRS  600
KNNQVSKNKM KEREGLAEKP GKTECKVSKN KMKEREGLAE KPGKTEFKNY FRSGGRKSGN  660
ACALNPRRGE ASVAPILENF MGLPIRPGEK DCSCYMRTLS CMYGTKCRFN HPDPTPAGES  720
DPPSGNGNGG LASLQGASSA TAARWYAPIS LNNAPLYEPI MIPPSQEFPS QNTEWNGYQA  780
TERSMPAPPP YVMNHSVTET NTYEQYPQQK QVQEFPERPG QPVCLYFSRS GDCKHKSNCK  840
YHHPKNQTAV PPSCDKGLLL RPGQNICTQY SAYGICNSGP ACKFNHPSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158500.20.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419582.10.0uncharacterized protein LOC18777998 isoform X1
TrEMBLA0A251P9490.0A0A251P949_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-79C3H family protein