PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158500.18.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 868aa    MW: 95968.6 Da    PI: 6.9526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158500.18.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06666690226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C+ ++rt  C yG +C+F+H+
  Prupe.5G158500.18.p 666 GEKDCSCYMRTLSCMYGTKCRFNHP 690
                          6789********************9 PP
2zf-CCCH201.2e-06797823127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C +f+r+G Ck+ ++Ck++H++
  Prupe.5G158500.18.p 797 PGQPVCLYFSRSGDCKHKSNCKYHHPK 823
                          57899********************96 PP
3zf-CCCH22.51.9e-07841865226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++ +C  ++++G+C+ G+ CkF+H+
  Prupe.5G158500.18.p 841 GQNICTQYSAYGICNSGPACKFNHP 865
                          6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.188664692IPR000571Zinc finger, CCCH-type
SMARTSM003560.98664691IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011796823IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61796824IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6839864IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4839866IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005839867IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-5841865IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLDKI RKLGPALLDK IRKFDPDVLD  60
ELRKIDPVLL DGLRKIHPTL LDELRKVDSA VLQEMQLEPA EWDPVIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTAKENE NGNQKTQSEE TDGGGGGENK NDNGGEVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NRKNNQNYFR SGGQHPNLYA SPNPGNDDVL SPNPGKVDSV  240
LQVDPTELDP AIIDAICKFS LKGKEEGEQE VEVSCSTPET EIRNKNGNKR QSEERDGGGG  300
VENKNENGGQ VEKKVDDGRS RRHHYPVRPP GAGDSSHNLK TGTHKFGSNC KFNRTRGSKN  360
NQVSKDKMKE REGLAEKPGQ TECKNYFRSG GQRQNRYAPQ NPGDNDSFSP NSDVSPNPGN  420
DGVLPQNPGK DDILPQNHGD TDCDLATLRE ILRHKTALLG IIRKLDAGLF GDIQKIDPAV  480
LHEMQADPAE WDPAIIDAIC KLSLEEKDES EEEVEVSCGG PETEIRNENR YKTQSKERDG  540
GGGENKNENG GEVQKKLDEE RSRRHHYPVR PPGAGDSSHN LKTGTHQFGS NCKFNLTHRS  600
KNNQVSKNKM KEREGLAEKP GKTEFKNYFR SGGRKSGNAC ALNPRRGEAS VAPILENFMG  660
LPIRPGEKDC SCYMRTLSCM YGTKCRFNHP DPTPAGESDP PSGNGNGGLA SLQGASSATA  720
ARWYAPISLN NAPLYEPIMI PPSQEFPSQN TEWNGYQATE RSMPAPPPYV MNHSVTETNT  780
YEQYPQQKQV QEFPERPGQP VCLYFSRSGD CKHKSNCKYH HPKNQTAVPP SCDKGLLLRP  840
GQNICTQYSA YGICNSGPAC KFNHPSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158500.18.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419584.10.0uncharacterized protein LOC18777998 isoform X3
TrEMBLA0A251P9860.0A0A251P986_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-82C3H family protein