PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158400.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 458aa    MW: 50704.4 Da    PI: 7.5849
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.1e-10163186427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + Cr +++tGtCk+G++CkF+H++
  Prupe.5G158400.2.p 163 RDCRCYLKTGTCKFGPNCKFNHPR 186
                         79********************96 PP
2zf-CCCH27.55.6e-09274294626
                         -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                         C  +++tGtC++G++CkF+H+
  Prupe.5G158400.2.p 274 CWSYLKTGTCNFGPSCKFNHP 294
                         668*****************8 PP
3zf-CCCH25.13e-08345369226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C+++ ++G Ck G +C+F+H+
  Prupe.5G158400.2.p 345 GEKECPYYVKNGSCKSGTNCTFNHP 369
                         7899********************9 PP
4zf-CCCH192.5e-06426450226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C  ++ +G+C+ G+ CkF H+
  Prupe.5G158400.2.p 426 GENICTQYSSYGICNSGPACKFDHP 450
                         5679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.1E-4159186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183159187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5161186IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7162186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4165184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5267296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235268296IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072270295IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6274294IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136343371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5344370IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-6345369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6420449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.375424452IPR000571Zinc finger, CCCH-type
SMARTSM003560.01424451IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4426450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MLPAAAVRVL LPVSASVIYV IYRYLRSGRQ IESSPNTSNN DVVPPQNSGN SDVVPYPELS  60
DRDRTILAEI LKDNHVLLDK IRALEPAFLD GLRKFKPAVL REMVFDPAEL DPVIVDASRK  120
LSLKGGKEEG EENENGNLNE TKSEERDEER SRSRHYPVRP GARDCRCYLK TGTCKFGPNC  180
KFNHPRITTK NNQNSFRSGG RHPNLYTTPN PGNDDVLPPN SDIPSILGND DVFPQNPGDP  240
DRENGNRNET QSEERDKERS RIHHYPVRFE DGDCWSYLKT GTCNFGPSCK FNHPHRRKNR  300
KNNQNYFRSG GCKPGNAFSF NPRRGEPSVA PVQKLNFMDL PIRPGEKECP YYVKNGSCKS  360
GTNCTFNHPD PTAIGESGPP SGYIDGGPAS VQGASSATAW DSLCVPMIPP SQGIPSQNTE  420
WNGSQGENIC TQYSSYGICN SGPACKFDHP SLSTFLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239394.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A251P9500.0A0A251P950_PRUPE; Uncharacterized protein
STRINGXP_008239394.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-36C3H family protein