PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G157600.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 601aa MW: 66382.1 Da PI: 5.9282 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.7 | 2.4e-14 | 31 | 121 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv+ s++l lp kfa + ++ +++ +led+ g +Wev + ++ g+ l++GW+ F +++Lk g+f++F ++ +s f Prupe.5G157600.5.p 31 FFKVM--IGDRFSKLLFLPPKFAPTVsALV---NQKAVLEDSLGLQWEVII--SRINGSLSLKQGWNAFSLDHDLKIGEFLIFNYITSSHF 114 67777..444555679*******9996555...347***************..9999999**************************98999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 vk+++k Prupe.5G157600.5.p 115 --IVKIYDK 121 ..***9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-18 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-21 | 25 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.365 | 29 | 122 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.26E-15 | 30 | 120 | No hit | No description |
SMART | SM01019 | 2.8E-8 | 31 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-12 | 31 | 121 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.234 | 505 | 600 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.67 | 509 | 596 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.26E-10 | 518 | 583 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-8 | 520 | 587 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.54E-7 | 532 | 583 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MDGKVACVEC TQKCLLDHGN KKKASPDVAS FFKVMIGDRF SKLLFLPPKF APTVSALVNQ 60 KAVLEDSLGL QWEVIISRIN GSLSLKQGWN AFSLDHDLKI GEFLIFNYIT SSHFIVKIYD 120 KSGCEKLNFP EAINQKKRTR DNRKYTFKAG PSHTIDRSSM NKRDSRTSVV HGSDADIGHH 180 LHEMNDTGKD LIVTESARDN SNERSKLNPK EAYIEEMICM LDRDVGDKQE EDRTYIFDLS 240 DFEMLKKNSG TGGSHEVTAM DETCTDHDDS LLRLRNGAGP VDKNPVAKGA VTTAIPMDET 300 CSDHDDSLLR LINEAGSVDK SPVAKEAVTA AIPSDASKFD GSQINNSSET KVQNTASPSH 360 EGLCICKTSW HLFPKAALKP EENENISNIS NTAINKCLTA DGSESLSGNE VVISGKEHDF 420 IDDSCQSANK KISEISESFD KTMKAIKIES VELTSDPCSQ KIIPQINGES VKVVNPVCSK 480 ISNMIRTGND CAVPVVKSEP VDPVITWPIS SSFSCQELPM RLPIRMTYRG RPQTDRRVVY 540 LRDPVMRLWP VLYIERNYFK TLASGWEAFS KANNIQPGDE CVIGIENGVE GICSVQIISK 600 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.4747 | 1e-170 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G157600.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419025.1 | 0.0 | B3 domain-containing protein Os01g0905400 isoform X2 | ||||
TrEMBL | A0A251P919 | 0.0 | A0A251P919_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239617.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G157600.5.p |