PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G157600.12.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 480aa    MW: 52677.1 Da    PI: 5.3697
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G157600.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-14311221100
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv+       s++l lp kfa +   ++   +++ +led+ g +Wev +  ++  g+  l++GW+ F  +++Lk g+f++F ++ +s 
  Prupe.5G157600.12.p  31 FFKVM--IGDRFSKLLFLPPKFAPTVsALV---NQKAVLEDSLGLQWEVII--SRINGSLSLKQGWNAFSLDHDLKIGEFLIFNYITSSH 113
                          77777..444555679*******9996555...347***************..9999999**************************9899 PP

                          E..EEEEE-SS CS
                   B3  90 felvvkvfrks 100
                          f   vk+++ks
  Prupe.5G157600.12.p 114 F--IVKIYDKS 122
                          9..***99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1824124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2125124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36529122IPR003340B3 DNA binding domain
CDDcd100176.84E-1630120No hitNo description
PfamPF023621.3E-1231121IPR003340B3 DNA binding domain
SMARTSM010192.8E-831122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDGKVACVEC TQKCLLDHGN KKKASPDVAS FFKVMIGDRF SKLLFLPPKF APTVSALVNQ  60
KAVLEDSLGL QWEVIISRIN GSLSLKQGWN AFSLDHDLKI GEFLIFNYIT SSHFIVKIYD  120
KSGCEKLNFP EAINQKKRTR DNRKYTFKAG PSHTIDRSSM NKRDSRTSVV HGSDADIGHH  180
LHEMNDTGKD LIVTESARDN SNERSKLNPK EAYIEEMICM LDRDVGDKQE EDRTYIFDLS  240
DFEMLKKNSG TGGSHEVTAM DETCTDHDDS LLRLRNGAGP VDKNPVAKGA VTTAIPMDET  300
CSDHDDSLLR LINEAGSVDK SPVAKEAVTA AIPSDASKFD GSQINNSSET KVQNTASPSH  360
EGLCICKTSW HLFPKAALKP EENENISNIS NTAINKCLTA DGSESLSGNE VVISGKEHDF  420
IDDSCQSANK KISEISESFD KTMKAIKIES VELTSDPCSQ KIIPQINGVA NEVANTHDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G157600.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419026.10.0uncharacterized protein LOC18776710 isoform X3
TrEMBLA0A251P9280.0A0A251P928_PRUPE; Uncharacterized protein
STRINGXP_008239617.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-12B3 family protein