PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G157600.10.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 581aa    MW: 64238.6 Da    PI: 5.6638
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G157600.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-1431121199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv+       s++l lp kfa +   ++   +++ +led+ g +Wev +  ++  g+  l++GW+ F  +++Lk g+f++F ++ +s 
  Prupe.5G157600.10.p  31 FFKVM--IGDRFSKLLFLPPKFAPTVsALV---NQKAVLEDSLGLQWEVII--SRINGSLSLKQGWNAFSLDHDLKIGEFLIFNYITSSH 113
                          77777..444555679*******9996555...347***************..9999999**************************9899 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f   vk+++k
  Prupe.5G157600.10.p 114 F--IVKIYDK 121
                          9..***9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1824124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2125124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36529122IPR003340B3 DNA binding domain
CDDcd100171.08E-1530120No hitNo description
SMARTSM010192.8E-831122IPR003340B3 DNA binding domain
PfamPF023621.7E-1231121IPR003340B3 DNA binding domain
PROSITE profilePS508639.234485580IPR003340B3 DNA binding domain
SMARTSM010190.67489576IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-10498563IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-8500567IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-7512563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDGKVACVEC TQKCLLDHGN KKKASPDVAS FFKVMIGDRF SKLLFLPPKF APTVSALVNQ  60
KAVLEDSLGL QWEVIISRIN GSLSLKQGWN AFSLDHDLKI GEFLIFNYIT SSHFIVKIYD  120
KSGCEKLNFP EAINQKKRTR DNRKYTFKAG PSHTIDRSSM NKRDSRTSVV HGSDADIGHH  180
LHEMNDTGKD LIVTESARDN SNERSKLNPK EAYIEEMICM LDRDVGDKQE EDRTYIFDLS  240
DFEMLKKNSG TGGSHEVTAM DETCTDHDDS LLRLRNGAGP VDKNPVAKGA VTTAIPMDET  300
CSDHDDSLLR LINEAGSVDK SPVAKEAVTA AIPSDASKFD GSQINNSSET KVQNTASPSH  360
EGLCICKTSW HLFPKAALKP EENENISNIS NTAINKCLTA DGSESLSGNE VVISGKEHDF  420
IDDSCQSANK KISEISESFD KTMKAIKIES VELTSDPCSQ KIIPQINGND CAVPVVKSEP  480
VDPVITWPIS SSFSCQELPM RLPIRMTYRG RPQTDRRVVY LRDPVMRLWP VLYIERNYFK  540
TLASGWEAFS KANNIQPGDE CVIGIENGVE GICSVQIISK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.47471e-151fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G157600.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419025.10.0B3 domain-containing protein Os01g0905400 isoform X2
TrEMBLA0A251P9170.0A0A251P917_PRUPE; Uncharacterized protein
STRINGXP_008239617.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-11B3 family protein