PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G156100.1.p

Common Name

PRUPE_ppa016418mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 530aa MW: 58679 Da PI: 6.3073

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G156100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	370.7	2e-113	157	528	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsP 89 lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++La+rla ++ + + +p ++++ +++ al+l +e++P Prupe.5G156100.1.p 157 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLANRLALVQPLGAVGFigSPMNAKDFALDKKEEALRLVYEICP 247 689************************************************9955544434413444444444999999****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175 ++f+h++aN+ Ilea+ege+ vH++D++++ +G QW L+++La+R+++pp +lRiTgvg ++++ +g+ L+ +A++lg++ Prupe.5G156100.1.p 248 HIQFGHFVANSSILEAFEGESYVHVVDLGMTlglpHGDQWRGLIESLATRAGQPPsRLRITGVGL----YGDRMQIIGDELEAYADRLGIN 334 ***********************99873333667*********888879****....9***************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +ef+v v+++le+l++e++++ gE+l+Vn++lqlh +++es + +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa Prupe.5G156100.1.p 335 LEFSV-VESNLENLRPEDIKLLDGEVLVVNSILQLHCVVKESRGALN---SVLQMVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSA 421 9.7****************************88877777...8************************************ PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356 +fdsl+a lp+ + r+k+E++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF+++p++ + +ak l k++ +gy++ ee+g Prupe.5G156100.1.p 422 IFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MLVNAKQWLGKINvCEGYTILEEKG 510 **********************************************************97..56789999*99****** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 +lvlgWk++p+v++S+W+ Prupe.5G156100.1.p 511 CLVLGWKSKPIVAASCWK 528 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.25	131	509	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-111	157	528	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MAPSRNFMPE EYMINHERTN KMSAFDLISH SAMSCYSNPY MPLLEEGNAS ALTFPYLDES 60 GNHKRLKRTI SIAESMSSHN SLYGGGSNNS CVTNGSISRS GSTNSLNTLP RLHFRDHIWT 120 YTQRYLAAEA VEEAAAAMIN AEGNGAEEDG TADGMRLVQL LIACAEAVAC RDKSHASALL 180 SELRANALVF GSSFQRVASC FVQGLANRLA LVQPLGAVGF IGSPMNAKDF ALDKKEEALR 240 LVYEICPHIQ FGHFVANSSI LEAFEGESYV HVVDLGMTLG LPHGDQWRGL IESLATRAGQ 300 PPSRLRITGV GLYGDRMQII GDELEAYADR LGINLEFSVV ESNLENLRPE DIKLLDGEVL 360 VVNSILQLHC VVKESRGALN SVLQMVHELS PKILVLVEQD SSHNGPFFLG RFMEALHYYS 420 AIFDSLDAML PKYDTRRAKM EQFYFAEEIK NIISCEGPAR VERHERVDQW RRRMSRAGFQ 480 AAPIKMLVNA KQWLGKINVC EGYTILEEKG CLVLGWKSKP IVAASCWKC*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MAPSRNFMPE EYMINHERTN KMSAFDLISH SAMSCYSNPY MPLLEEGNAS ALTFPYLDES  60
GNHKRLKRTI SIAESMSSHN SLYGGGSNNS CVTNGSISRS GSTNSLNTLP RLHFRDHIWT  120
YTQRYLAAEA VEEAAAAMIN AEGNGAEEDG TADGMRLVQL LIACAEAVAC RDKSHASALL  180
SELRANALVF GSSFQRVASC FVQGLANRLA LVQPLGAVGF IGSPMNAKDF ALDKKEEALR  240
LVYEICPHIQ FGHFVANSSI LEAFEGESYV HVVDLGMTLG LPHGDQWRGL IESLATRAGQ  300
PPSRLRITGV GLYGDRMQII GDELEAYADR LGINLEFSVV ESNLENLRPE DIKLLDGEVL  360
VVNSILQLHC VVKESRGALN SVLQMVHELS PKILVLVEQD SSHNGPFFLG RFMEALHYYS  420
AIFDSLDAML PKYDTRRAKM EQFYFAEEIK NIISCEGPAR VERHERVDQW RRRMSRAGFQ  480
AAPIKMLVNA KQWLGKINVC EGYTILEEKG CLVLGWKSKP IVAASCWKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-62	164	527	26	378	Protein SCARECROW
5b3h_A	9e-62	164	527	25	377	Protein SCARECROW
5b3h_D	9e-62	164	527	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G156100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007210018.2	0.0	DELLA protein RGL1
TrEMBL	A0A251P952	0.0	A0A251P952_PRUPE; Uncharacterized protein
STRING	EMJ11217	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-80	RGA-like 1

Link Out ? help Back to Top
Phytozome	Prupe.5G156100.1.p
Entrez Gene	18778049