PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G152800.3.p | ||||||||
Common Name | PRUPE_ppa001238mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 903aa MW: 99587.2 Da PI: 8.9531 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66.1 | 7.4e-21 | 810 | 890 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev +Li++r ++ +r++ k +++lWee+s+++ + g++rsp qCk+ w +l ++y++ k g++++ +++pyf++++ Prupe.5G152800.3.p 810 KWKPEEVEKLIKMRGKLRSRFQVVKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEESKSGKRSQ-----KSWPYFEEMD 890 7******************************************************************9984.....56*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.7E-67 | 101 | 351 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 6.43E-72 | 102 | 516 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 1.2E-24 | 114 | 311 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 7.7E-11 | 126 | 261 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 2.2E-5 | 457 | 488 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 8.502 | 803 | 867 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-6 | 805 | 869 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0012 | 807 | 869 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.0E-18 | 808 | 890 | No hit | No description |
CDD | cd12203 | 3.71E-20 | 809 | 874 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 903 aa Download sequence Send to blast |
MQLGVLGGLS VHHSLCSAPF RPSVSTQMAA FGALSPCPYS LLWRPKPTNR CVSCSVGSSA 60 VTGTRGSNVK RSGRMEGPRK SMEDSVQRKM EQFYEGREGP PIRVLPIGGL GEIGMNCMLV 120 GNYDRYILID AGVMFPDFDE LGVQKIIPDT TFIKKWSHKI EAIVITHGHE DHIGALPWVI 180 PALDPRTPIF ASSFTMELIK KRLKEHGIFV PSRLKTFRTK RKFMAGPFEI EPVRVTHSIP 240 DCCGLVLRCS DGTILHTGDW KIDESPLDGR GFDREALEEL SKEGVTLMMS DSTNVLSPGR 300 TTSETSVADA LLRHISAAKG RVITTQFASN IHRLGSVKAA ADFTGRKLVF VGMSLRTYLD 360 AAWKDGKAPI DPSSLVKVED IDSYAPKDLL IVTTGSQAEP RAALNLASFG SSHSVKLTKE 420 DIILYSAKVI PGNESRVMKM LNRISEIGST IVMGKNEGLH TSGHGYRGEL VKVLQIVKPQ 480 HFLPIHGELL FLKEHELLGR STGIRHTTVI KNGEMLGVSH LRNRRVLSNG FTLLGKENLQ 540 LKFSDGDKAF GTSSELCVDE RLRVALDGII VVSMEILRPQ NVNGLTENSI KGKIKITTRC 600 LWLDKGKLID ALHKAAHAAL SSCPINCPLP HMERTVSEVL RKLVRKYSGK RPDVIAIAME 660 NPAAVLADEV SVRLSGKSHV GSEMSTLRKV IDRHPYKSQS TRTQADEGKD NARLQSTSQQ 720 DTEDSVLEDD GIEVEVLLPE EDSATSNSKS EKLSSDSEKS DDFWNAIVGL STVDKSVEDK 780 NGLAVQQEHL KKDGPDNSEI PSSKPVKRNK WKPEEVEKLI KMRGKLRSRF QVVKGRMALW 840 EEISRNLLAD GINRSPGQCK SLWASLVQKY EESKSGKRSQ KSWPYFEEMD GALSDSEEMA 900 TK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 3e-89 | 102 | 660 | 19 | 560 | RIBONUCLEASE J |
5a0t_B | 3e-89 | 102 | 660 | 19 | 560 | RIBONUCLEASE J |
5a0v_A | 3e-89 | 102 | 660 | 19 | 560 | RIBONUCLEASE J |
5a0v_B | 3e-89 | 102 | 660 | 19 | 560 | RIBONUCLEASE J |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During the early stages of embryo development, first observed at the transition stage. In the heart and torpedo stages, predominantly present in the upper part of embryos. In seedlings, strongly expressed in shoot meristems, hypocotyls, in the vascular bundles of cotyledons, and in the veins of mature leaves. In reproductive organs, detected in inflorescences, especially in sepals, filaments, and stigmas, as well as in mature siliques and seeds. {ECO:0000269|PubMed:25871650}. | |||||
Uniprot | TISSUE SPECIFICITY: Moslty expressed in inflorescences, seedlings, leaves, flowers and flower buds, and, to a lower extent, in stems, siliques and roots. {ECO:0000269|PubMed:25871650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G152800.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007210498.2 | 0.0 | uncharacterized protein LOC18777440 isoform X1 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A251P8W5 | 0.0 | A0A251P8W5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239449.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G152800.3.p |
Entrez Gene | 18777440 |
Publications ? help Back to Top | |||
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