PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G149400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23517.9 Da PI: 10.5655 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.3 | 2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+ii+s++gk+y ++s Prupe.5G149400.1.p 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVAIIILSPSGKIYQFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 58 | 4.1e-20 | 92 | 176 | 16 | 100 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++e + L++ i nL+ +++l Ge+L+ L ++eL+qLe+qL++++++iRs+ +++ e+i+ l++k k++qeen +L+k++ e Prupe.5G149400.1.p 92 RRNNENEELRRSIANLEMRLKNLAGEELDILGMQELKQLERQLKTGVERIRSQIGRVISENISSLKRKHKAMQEENSRLQKRFHE 176 4578999*************************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.324 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-31 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.58E-37 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 6.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.226 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.2E-17 | 93 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVAIIILSP SGKIYQFASH 60 DINRTIAMYR NQVGLPESNN SSFRRDRTME FRRNNENEEL RRSIANLEMR LKNLAGEELD 120 ILGMQELKQL ERQLKTGVER IRSQIGRVIS ENISSLKRKH KAMQEENSRL QKRFHELHHY 180 ADHASSSILG PNAYMQFFPS EF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 4e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 4e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 4e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 5e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 5e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 5e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 5e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G149400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211026.2 | 1e-147 | agamous-like MADS-box protein AGL19 | ||||
TrEMBL | A0A251P8P1 | 1e-145 | A0A251P8P1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239493.1 | 1e-130 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 5e-43 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G149400.1.p |