PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G149000.2.p | ||||||||
Common Name | PRUPE_ppa006611mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 404aa MW: 44188.1 Da PI: 8.1049 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.8 | 2.3e-41 | 94 | 170 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls +++yhrrhkvCe hsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Prupe.5G149000.2.p 94 CLVDGCNSDLSVCRDYHRRHKVCELHSKTPQVTINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-33 | 87 | 155 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.795 | 91 | 168 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-38 | 92 | 173 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.7E-31 | 94 | 167 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MDWNLKAPSW DLTELEQETF SNLGTVDGSS SFGDHRTIKG NFSVDLKLGQ LGDSGNNELV 60 DMLKEAGGPK TTSSPSGPSK RSRAAYSGSQ TVSCLVDGCN SDLSVCRDYH RRHKVCELHS 120 KTPQVTINGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP EPLSRSGSFL 180 SSYQGTQLLP FSSSLVYPST TVVNPTWAGV VKAEADTGLH NQHLQLPLID KQNMFLGSST 240 STSSTYKGGK QFSLFQSSPL HNQTSHHGAS VCQPLLNTIS FSETGGGAKS KMFCDRLTTQ 300 IHDSDCALSL LSSPQTQQTS EIGLRHMVQQ PNSISLMQQR LGPGGLHGNN SIEPMDSVLV 360 SNGSEANVHC PGMFHLGSDG SLGNNQQHQH QHQAPQTLPF HWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-28 | 94 | 167 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 167 | KRSCRKRLDGHNRRRRKP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G149000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209206.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_020420484.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
TrEMBL | M5WUE7 | 0.0 | M5WUE7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10405 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-75 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G149000.2.p |
Entrez Gene | 18776256 |