PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.5G147600.2.p | ||||||||
Common Name | PRUPE_ppa003602mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 419aa MW: 45903.7 Da PI: 4.9902 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 1.9e-08 | 106 | 146 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+ E +ll++ v ++G + W+ +a+ ++ ++t +c+ ++ Prupe.5G147600.2.p 106 EWTESETLLLLESVLKHGDD-WEFVAQNVQ-TKTKFDCIAKLI 146 7*****************88.*********.*******98875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 14.363 | 102 | 153 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.33E-8 | 102 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-6 | 103 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 105 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.23E-6 | 106 | 144 | No hit | No description |
Pfam | PF00249 | 1.4E-8 | 106 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF16495 | 1.8E-20 | 328 | 401 | IPR032451 | SMARCC, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 419 aa Download sequence Send to blast |
MPNSIKPILP ISAPPKAGDA GGGVVNRITL APLASYSDVF GGLKKEEGLV CGNCGGHCET 60 GHYKYSKGDF LICIKCFENG NYGENKLRDD FKLNEAIEKS GTNGVEWTES ETLLLLESVL 120 KHGDDWEFVA QNVQTKTKFD CIAKLIDLPF GELVLGSAYR KGNPSSFSGN LISSERIQLS 180 SSECQDTVET NGQLHEQTDD CKQNGDILDQ DPPLKRQRIA SLSDASSSLI KQVAAITTMV 240 GPHITSAAAE AAVNALCEET SCSREIFNAD DDSIPNGLWS PAKNCETERV HGEDSEMKER 300 PTQSESRHAI FKKDDIPPTL QIRAAIGTAL GAAAAHAKLL ADQEDRQIEH LMATIIGTQM 360 KKLHSKLKHF EDLELIRKKE CAQIEEVEDI LVEERMNILQ RTFDSGVPRW RDHPSLKS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.5G147600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209093.1 | 0.0 | SWI/SNF complex subunit SWI3A | ||||
TrEMBL | A0A251P8R2 | 0.0 | A0A251P8R2_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5W978 | 0.0 | M5W978_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10292 | 0.0 | (Prunus persica) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.5G147600.2.p |
Entrez Gene | 18776344 |