PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G141300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 30004.9 Da PI: 6.6367 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6.1e-20 | 59 | 108 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + + +r++lg+f tae Aa a++aa+++++g Prupe.5G141300.1.p 59 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFETAEAAALAYDAAALRFKG 108 7********.**********9...3.35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.6E-33 | 58 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.053 | 59 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-22 | 59 | 117 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-37 | 59 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.42E-21 | 59 | 117 | No hit | No description |
Pfam | PF00847 | 3.8E-14 | 59 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MSAMVSALAQ VIGITDQTPV VQVPAEPLVN PLPSAMELHD DQPPQLQAAQ NQGNVRRRHY 60 RGVRQRPWGK WAAEIRDPNK AARVWLGTFE TAEAAALAYD AAALRFKGSK AKLNFPERVQ 120 GGDELGYLTT TGPQDLAAGG SRRTELAHHN QPLSDHQYQL QANPNNVNFT QPDQYAQYFR 180 GGNYENLSYD VLPSTFYERE RSFFSQTLSA TTTTSSSSSS VAFVPSQQED QDQHVQQQQP 240 LSFSMAQQPF GSSSSSSSDP YKNKKDFGQH P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 58 | 123 | 4 | 70 | ATERF1 |
3gcc_A | 1e-27 | 58 | 123 | 4 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G141300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418892.1 | 0.0 | ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A251P8C1 | 0.0 | A0A251P8C1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239643.1 | 1e-150 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 2e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G141300.1.p |