PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G134900.1.p
Common NamePRUPE_ppa019131mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 415aa    MW: 46906.9 Da    PI: 7.7856
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G134900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-3132136199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  Prupe.5G134900.1.p  32 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlG 122
                         89***************************966778999*************************************************7778 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Prupe.5G134900.1.p 123 ElGKDRLFIDWRRR 136
                         99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-4126140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2929136IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-2630119No hitNo description
PfamPF023623.6E-2932136IPR003340B3 DNA binding domain
PROSITE profilePS5086314.64932137IPR003340B3 DNA binding domain
SMARTSM010193.1E-2232137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDSSPRDRDN NEEDDGSRRE ENPIAIEREH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL  60
DSSTNEKGLL LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG  120
LGELGKDRLF IDWRRRPDAP DPIHHNHHHP HQLHPHHHHY QPNFAIAHHQ QQQQQHFSWN  180
HHQRSVPWSP LLMRPPPGGG LVPRDHLQHL SQQINYSMNM HHPYRNTGTS STAGGGSGGS  240
SYGYGNVVSS SGPIYYLRSA SSTAPHEYEG SGLGLQQQLQ QQQQQQQQQQ VQLLGRVHEP  300
NMVLESVPVV HGKAAAKRLR LFGVNMDCPI SESDHECDIL SSSSSQYHHA TMASPSHQLS  360
PSSQPPLQLR LFDGTPLHST TTTTTSASTT TDFLSIRGKH QASSPFSMSL DFDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-66271373114B3 domain-containing transcription factor NGA1
5os9_B2e-66271373114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G134900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420552.10.0B3 domain-containing protein Os02g0683500 isoform X1
TrEMBLM5WWQ70.0M5WWQ7_PRUPE; Uncharacterized protein
STRINGEMJ112300.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-66B3 family protein