PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G131600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 558aa    MW: 61570.1 Da    PI: 7.9209
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G131600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.27.1e-24239283145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e+
  Prupe.5G131600.1.p 239 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSRPRSRKPVES 283
                         79****************************************986 PP
2QLQ51.82.5e-18138171235
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 
                         +FT+aQ ++L++Q ++y+yL++++PvPp+Ll++i
  Prupe.5G131600.1.p 138 PFTPAQREELERQTMIYRYLMSSAPVPPHLLVPI 171
                         8********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-10137173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.888138173IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.4E-13138171IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.077239283IPR014977WRC domain
PfamPF088791.2E-19240282IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGKRNGFVVA SEKGTAEETT ECCDIGLGLM MQKTHQSFPR KKMMMMMPHH HDHHEQTLLS  60
SGGSFGGEGC GVFEHSASGP LFCNTSNPVT SCISDIYNAV GSDFGSLVPK SLQQPYSDHS  120
LSFSPSVGGM VNVNVRLPFT PAQREELERQ TMIYRYLMSS APVPPHLLVP IAKNPSNVAH  180
LYPNCKSFCS SFLFIFWYFF NNVVFLCFKE HSFPLSLVIG FVFLVVRGSL ELGFSSNSDP  240
EPWRCKRTDG KKWRCSRDVA PDQKYCERHA HKSRPRSRKP VESNPNFINN NTTTTTRMRS  300
PRSNFVKNNN SNQPTPFSTN MVSPTVPSHA QPRSMGWFMN GETPTAPTAG GSNQEWEQMM  360
QFKLGLKSCY TKCNTDVDVS KQQNESSFNL YREYTGESQG LQTQRPSHDQ YGLLLSPKLA  420
HLEGALNSNQ TQQTRHFIDA WSTTTERDSS IGEIGNRGYV SSNQKLPFSS LTLSMSRGNE  480
TNEETDNTQM GLGILGSERE NVGDLKSQWM NPLSCMSSPP GGPLAEALCL GIASSTRATS  540
SNGCISGSTS SGDGVYT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G131600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211032.10.0growth-regulating factor 8 isoform X1
TrEMBLA0A251P7R70.0A0A251P7R7_PRUPE; Uncharacterized protein
STRINGEMJ122310.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.15e-53growth-regulating factor 8