PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G130500.1.p
Common NamePRUPE_ppa027182mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 491aa    MW: 54991.4 Da    PI: 6.7305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G130500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-12309356355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Prupe.5G130500.1.p 309 STHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 356
                         68*************************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-4022219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.19306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-13309360No hitNo description
PfamPF000101.9E-9309355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-17309372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17309368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-15312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEDIISPCSS PKFGQENSAT FHQRLQFIVQ NRPEWWAYSI FWQASKDNND DQVVLSWAGG  60
HFKSSRDFAS KRSNKMTNNY QPKFGFSSVE RKNVNNREVE VLFDEEDMVD LDTSLVDHGV  120
GDVTDSEWFY FYTVSLTQSF AAGHGNNSIL DRAFCSGGFV WLAGDHELQF YECERVKEAR  180
MHGIQTLVCV ATPCGVLELA SLDVIKEDWG LVHLSKSLFE SNNNRVSKQG SRDGNVLVSL  240
LENEMFSGGQ KDLTRQECCV KEATPVNIGG SSSDSPSDSV GNFTSANAKN IRLKKRGRSS  300
NHGTGRESST HVEAERQRRE KLNHRFYVLR SVVPNVSKMD RSSLLADAVA YINQLKEKVE  360
ELEAKIQAQP QNPKVGHVSN LDHHHHHNSQ STGSIVDHHS SSYNINKAGA ALEVDVKILG  420
SEAMIRVQCP DQDYPYAKLM NALKALGFQV YHASISSVKE LMIQDVVARV PYGFNSEEAV  480
KMGIIKRWYN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-26112222195Transcription factor MYC3
4rqw_B5e-26112222195Transcription factor MYC3
4rs9_A5e-26112222195Transcription factor MYC3
4yz6_A5e-26112222195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292298LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G130500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419037.10.0transcription factor MYC2
TrEMBLA0A251P7Q50.0A0A251P7Q5_PRUPE; Uncharacterized protein
STRINGEMJ121230.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.19e-61bHLH family protein