PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.5G117800.1.p | ||||||||
Common Name | PRUPE_ppa009005mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 311aa MW: 34377.6 Da PI: 8.1846 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 112 | 162 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge Prupe.5G117800.1.p 112 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 162 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.75E-17 | 111 | 171 | No hit | No description |
SMART | SM00380 | 1.1E-36 | 112 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 112 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-31 | 112 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 112 | 169 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.8E-10 | 113 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-13 | 113 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MDTMQDSKLA FGFSDTIDIR SSLSNLILTS NTNTLDSIFS HCPQTLSTTT SNNSSVSEPL 60 GSSVYLRQRD LLQKFCDESR ANAEVSRFFQ KNPVQSSACS STSYMAPCKK KLYRGVRQRH 120 WGKWVAEIRL PQNRMRVWLG TYDTAEAAAY AYDRAAYKLR GEYARLNFPN LKDPSKMGFG 180 DCARLDAVKT SVDAKIQAIC QKVKRERAKK NAKKSSNSSE NEKAVMKVDS SLSSSSPSGF 240 GDGSGQELVS STPTATPTVS EDGVWRCENS PPSISTEWPM GMAEDLEFEG CLLARMPSYD 300 PELIWEVLAN * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 109 | 169 | 2 | 63 | ATERF1 |
3gcc_A | 3e-20 | 109 | 169 | 2 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppe.19460 | 1e-177 | fruit |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.5G117800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT369557 | 0.0 | KT369557.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209382.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 3e-68 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | M5WB92 | 0.0 | M5WB92_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10581 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64380.1 | 3e-43 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.5G117800.1.p |
Entrez Gene | 18776002 |
Publications ? help Back to Top | |||
---|---|---|---|
|