PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G093400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 431aa    MW: 47877 Da    PI: 8.9092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G093400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-1658102348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          WT+eEd ll ++v+++   +Wk Ia++++ gRt+ qc  rwqk+l
  Prupe.5G093400.1.p  58 CWTEEEDNLLGELVRKFNRSNWKEIAACLP-GRTDVQCLQRWQKVL 102
                         6*****************99**********.************986 PP
2Myb_DNA-binding58.71.3e-18108154148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd  +++ v+ +G ++W+ Ia+ ++ gR +kqc++rw+++l
  Prupe.5G093400.1.p 108 KGPWTKEEDNCIIKQVESHGAKRWSVIAKFLP-GRMGKQCRERWYNHL 154
                         79******************************.*************97 PP
3Myb_DNA-binding47.44.3e-15160202145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r++WT+eE+  l  +++++G++ W+ Iar ++ gRt++ +k++w+
  Prupe.5G093400.1.p 160 RNAWTEEEEWVLTYYHQLFGNK-WAEIARFLP-GRTDNAIKNHWN 202
                         789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.55950102IPR017930Myb domain
SMARTSM007172.5E-1455104IPR001005SANT/Myb domain
SuperFamilySSF466892.07E-1658112IPR009057Homeodomain-like
PfamPF002493.9E-1458102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2359110IPR009057Homeodomain-like
CDDcd001671.52E-1359102No hitNo description
PROSITE profilePS5129429.187103158IPR017930Myb domain
SuperFamilySSF466892.42E-30105201IPR009057Homeodomain-like
SMARTSM007173.9E-16107156IPR001005SANT/Myb domain
PfamPF002497.8E-18108154IPR001005SANT/Myb domain
CDDcd001677.78E-16110154No hitNo description
Gene3DG3DSA:1.10.10.601.6E-24111154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-20155209IPR009057Homeodomain-like
SMARTSM007179.8E-14159207IPR001005SANT/Myb domain
PROSITE profilePS5129417.765159209IPR017930Myb domain
PfamPF002495.3E-12160202IPR001005SANT/Myb domain
CDDcd001674.40E-10162205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAKVKKEQLQ EVVVDPYEKI GFLLQALYET EGCFNSPASK PSSATRRATG PMRRSAKCWT  60
EEEDNLLGEL VRKFNRSNWK EIAACLPGRT DVQCLQRWQK VLNPEIVKGP WTKEEDNCII  120
KQVESHGAKR WSVIAKFLPG RMGKQCRERW YNHLCPAINR NAWTEEEEWV LTYYHQLFGN  180
KWAEIARFLP GRTDNAIKNH WNCTLKRKLD SYSPNGCDVD MHPDVWNGEL RSGLVEINPA  240
GQISDRLASL NQRTGLEISD SACSTELTLG CSYRHELCSE WKPVKVQKCR SSDRGASSLT  300
NLITSGSSKH SPLSASSSVF VGASASTRSS PLESPSCYST PQSRPQNVNV NLSSGSSPGS  360
RLKNLALSFK NTPSIIRKRS SRRPDASSAA VKSLGRCLER EFDAENDSGV TKCGQLFSAH  420
ATSSDVNVGV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-66592099159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-66592099159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G093400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419693.10.0transcription factor MYB3R-5 isoform X1
TrEMBLA0A251P5X50.0A0A251P5X5_PRUPE; Uncharacterized protein
STRINGXP_008238820.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.13e-76Homeodomain-like protein