PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G090800.1.p
Common NamePRUPE_ppa026499mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 185aa    MW: 19705.9 Da    PI: 4.4182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G090800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37.1e-171159255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r ++  g+Wv+eIr+p++   +kr++lg+f tae+Aa+a++ a+++l+g
  Prupe.5G090800.1.p 11 TYRGIR-CR-GGKWVSEIREPRK---TKRIWLGTFPTAEMAAAAYDVAALALKG 59
                        69***9.55.7*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.0471167IPR001471AP2/ERF domain
SMARTSM003803.8E-261175IPR001471AP2/ERF domain
PfamPF008474.7E-101159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-261167IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-181167IPR016177DNA-binding domain
CDDcd000181.29E-151267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MASTSSGKHP TYRGIRCRGG KWVSEIREPR KTKRIWLGTF PTAEMAAAAY DVAALALKGA  60
DVVLNFPGFI GSYPVPASTS AQDIRSAAAA AAATLRKNDD SRESPGQRQT DDKDDMTVSN  120
SISLASSSVG DFMDEEELFG MPNLLMDMAE GMLVSPPRMN DSPPSDYDDS PGNSDGGESL  180
LWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-148671172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G090800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695350.0KT369535.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210477.21e-133ethylene-responsive transcription factor ERF027
SwissprotQ9FJ909e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLM5WEE91e-132M5WEE9_PRUPE; Uncharacterized protein
STRINGEMJ116761e-132(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-35ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]