PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G090100.1.p | ||||||||
Common Name | PRUPE_ppa010800mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26352.7 Da PI: 4.9388 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 57 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + +Wv+e r+p + k+ r++lg++ tae+Aa+a++ a+++++g Prupe.5G090100.1.p 57 PVYRGVRRRN-NDKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 108 68*****887.8******9998...5477************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-13 | 57 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.405 | 58 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 58 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-28 | 58 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-21 | 58 | 118 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-7 | 59 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.65E-29 | 59 | 118 | No hit | No description |
PRINTS | PR00367 | 1.3E-7 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDLSQLSDPV DQPESSSLSD ASVTTQGPSW SDGDVILASS LPKKRAGRRV FKETRHPVYR 60 GVRRRNNDKW VCEMREPNKK KSRIWLGTYP TAEMAARAHD VAALAFRGKL ACINFADSAW 120 RLPLPASMDT MDIRRAAAEA AERFRPAEFG GMCSGSSDEK ERMVVQVEEE DKKGSVNLER 180 SLSLSCWDEE EAFDMPRLLH DMAEGLLLSP PQPLGSDMNL DDMGTDADIK LWSFSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 45 | 115 | 3 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G090100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC543499 | 0.0 | KC543499.1 Prunus persica CBF/DREB 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209547.1 | 1e-174 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9LN86 | 3e-60 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | M5WBR4 | 1e-172 | M5WBR4_PRUPE; CBF/DREB 3 | ||||
STRING | EMJ10746 | 1e-173 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 6e-54 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G090100.1.p |
Entrez Gene | 18776409 |
Publications ? help Back to Top | |||
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