PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G089900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25521.9 Da PI: 7.9305 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 1e-16 | 48 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +++Wv+e+r p + k+ ++lg++ tae+Aa+a++ a+++++g Prupe.5G089900.1.p 48 PVYRGVRRRD-NNKWVCELRQP---NkKKSGIWLGTYPTAEMAARAHDVAALAFKG 99 68*****998.8******9998...5477**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.7E-13 | 48 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-20 | 49 | 108 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.391 | 49 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-24 | 49 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-28 | 49 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.60E-25 | 50 | 109 | No hit | No description |
PRINTS | PR00367 | 1.2E-6 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
VSDSADQPRS SSSSDASVST LRTSDVILAS SSPKKRAGRK VFKETRHPVY RGVRRRDNNK 60 WVCELRQPNK KKSGIWLGTY PTAEMAARAH DVAALAFKGK LACLNFADSG WRLPVAASMD 120 SMDIQRAAAE AAEGFRPVEF GGVSSGSSDE KERMVVVEEK KKKQAIVDMG KSCSRLNLFY 180 LDEEEMFDMP RLIDNMAEGL LLSPPQCLAG YLNWDDMETE ADSKLWSFSI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G089900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX464667 | 0.0 | JX464667.1 Prunus ferganensis cultivar Kashi2 C-repeat binding factor (CBF) gene, complete cds. | |||
GenBank | JX464668 | 0.0 | JX464668.1 Prunus persica cultivar Shanghaishuimi C-repeat binding factor (CBF) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209842.2 | 1e-170 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | Q9FJ93 | 4e-61 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | K4HQP7 | 1e-169 | K4HQP7_9ROSA; C-repeat binding factor | ||||
TrEMBL | K4HX41 | 1e-169 | K4HX41_PRUPE; C-repeat binding factor | ||||
TrEMBL | M5WCL4 | 1e-169 | M5WCL4_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | EMJ11041 | 1e-170 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 7e-61 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G089900.1.p |
Publications ? help Back to Top | |||
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