PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G088800.1.p | ||||||||
Common Name | PRUPE_ppa018648mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 374aa MW: 38836.1 Da PI: 7.167 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.8 | 5.6e-36 | 87 | 194 | 2 | 106 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasns 85 ++++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + + s sa+ Prupe.5G088800.1.p 87 PTRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkIPTTASTSAD-- 175 57999***********************************************************8888855544433221111111222.. PP TCP 86 ssgkaaksaakskksqksaas 106 +++++s++++k+++ s+++ Prupe.5G088800.1.p 176 --DNSSPSSTTKKRKRPSNSE 194 ..2333333333333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-29 | 92 | 188 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.003 | 93 | 147 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MTSYLEDQDD DGGTSDLSTS TGDPEDNNKN NGNRVVSTQP NFDETTAFQQ LKEEPIDSDP 60 PPQAHSIGMV PVAMQMPMSV AVPVSNPTRR ASTKDRHTKV EGRGRRIRIP ATCAARIFQL 120 TRELGHKSDG ETVRWLLEHA EQAIIEATGT GTVPAIAVSV GGTLKIPTTA STSADDNSSP 180 SSTTKKRKRP SNSEFVDLKN DAVSQSSGLA PVGPAAPQGL VPVWAVGGAG LMVPANAFWM 240 GPVGSGAGPS GPQPQIWALS PTVTPVFNVA GATRPISSFV ANNGGGVEVR APSPALSNSA 300 ASTSTVGPRA AKRSSTTMAP SVSSSSNNSN GSGSGASKAQ MLRDFSLEIY DKQELQFMGR 360 PVGPPTTHQH QTQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G088800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP784450 | 4e-83 | KP784450.1 Rosa chinensis putative TCP9 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211057.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 6e-73 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | M5WG46 | 0.0 | M5WG46_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12256 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 4e-55 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G088800.1.p |
Entrez Gene | 18777070 |