PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G055100.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 346aa MW: 38782.2 Da PI: 10.0389

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G055100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.9	1.1e-17	16	104	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +Wt++e + Li ++++++++l+r++l++ +We v++++ ++++qC++k+e+l+kry+++k++ + + + st+ +f+ + Prupe.5G055100.1.p 16 CWTNDEAQGLISIYKDTWSALGRSNLRASDWETVAAALasrcPLVSPPKTAIQCRHKMEKLRKRYRNEKQRGSTHPGRFLSTWDLFRPM 104 8**********************************95332233448899*********************999999999999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-17	15	104	No hit	No description
PROSITE profile	PS50090	6.144	17	77	IPR017877	Myb-like domain
SMART	SM00595	3.2E-5	24	112	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAAPPQPKPR KFPPPCWTND EAQGLISIYK DTWSALGRSN LRASDWETVA AALASRCPLV 60 SPPKTAIQCR HKMEKLRKRY RNEKQRGSTH PGRFLSTWDL FRPMFDLECE APALFGSDPD 120 RETRVGVQFG RGFRVRKDEI VRYLAESDQN LSDPDEETWK GAGFRGGFRV NVGVRGKGGE 180 NSSFSAGFDR YVSRGNDEAR GFPVKSSGDR NLGPSEFGSK SYGKTCNEKF SPKRNLKRDC 240 SYGAGTKSGF YKKFRGGLDS DGVGKEVEDP IGQMASSVEF MGEVFLKMEK KKMEMARDIV 300 KMRMEMEMRQ NELIMESQKQ VLAACVDALL ESKKKKKMKV VSSDS*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAAPPQPKPR KFPPPCWTND EAQGLISIYK DTWSALGRSN LRASDWETVA AALASRCPLV  60
SPPKTAIQCR HKMEKLRKRY RNEKQRGSTH PGRFLSTWDL FRPMFDLECE APALFGSDPD  120
RETRVGVQFG RGFRVRKDEI VRYLAESDQN LSDPDEETWK GAGFRGGFRV NVGVRGKGGE  180
NSSFSAGFDR YVSRGNDEAR GFPVKSSGDR NLGPSEFGSK SYGKTCNEKF SPKRNLKRDC  240
SYGAGTKSGF YKKFRGGLDS DGVGKEVEDP IGQMASSVEF MGEVFLKMEK KKMEMARDIV  300
KMRMEMEMRQ NELIMESQKQ VLAACVDALL ESKKKKKMKV VSSDS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G055100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020420492.1	0.0	uncharacterized protein LOC18776713
TrEMBL	A0A251P427	0.0	A0A251P427_PRUPE; Uncharacterized protein
STRING	EMJ11933	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-27	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G055100.1.p