PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.5G053800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 563aa MW: 65129.2 Da PI: 8.393 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.7 | 7.2e-22 | 22 | 109 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Yn+YA+++GF+vr+ +++++ +++ + + Cskeg+r +++ + + + ++ etrtgC+a+++ ++ +g w+v++++++HnHela Prupe.5G053800.1.p 22 LYNSYATRTGFTVRRGQKRYN-TKKVLRQFSYFCSKEGFRLDSDPS-KVSMANKLETRTGCEARIRFAFQDdNGMWKVSHFVSKHNHELA 109 7****************9998.66779999************9999.89999****************9999****************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-18 | 22 | 109 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-34 | 173 | 267 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 8.5E-5 | 454 | 483 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.854 | 454 | 490 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0032 | 465 | 492 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 563 aa Download sequence Send to blast |
MESFEEDLLG KVVSTEEDAY NLYNSYATRT GFTVRRGQKR YNTKKVLRQF SYFCSKEGFR 60 LDSDPSKVSM ANKLETRTGC EARIRFAFQD DNGMWKVSHF VSKHNHELAM PEERQFLRSN 120 RKVSEAHLDC YNVVNKEKMV MIEAVQVDQE NRMTNFFWRD GRSRIDYDCF GDVVVFDTTY 180 RTNRYNMICA PFVGVNHHWK NVLFGCAFLL DEKTDSFIWL FETFLESMGG RKPKTIFTDQ 240 CQAMANGIEK VFPGVCHRLC SWHISQNAAR NLGSYYGNPE FNHMFNKCLQ GYCETKLEFQ 300 STWDDLLAKF NLTGNLWLKT LYSLCAKWCP VFSQHIFTAK TKSSQRSKST NNVFHQMSTK 360 TMSLTQFVHH YDKQAEKMHS RELEESFCCN QGLLSRISKS SGPLNHAATI YTRKIFKLFE 420 KEFVDSLGVM MHEVGSDGTI HSFELNEEGH KRVYIVQLNS LNCSISCSCE MFESMGLLCR 480 HTLTKYAKKG FEASEHGELL QTKGKASVTL RRNTLMRTTY DVLTKASETE NTTRIALQKL 540 REIAGLIEKE MIKSKGEDYF SI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.5G053800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020412974.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_020422922.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A251P5L5 | 0.0 | A0A251P5L5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20729 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-81 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.5G053800.1.p |