PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G033300.1.p
Common NamePRUPE_ppa017746mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 315aa    MW: 34909.8 Da    PI: 8.8022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G033300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-14116167155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++++ + a+i+  A+e++k+L+
  Prupe.5G033300.1.p 116 QRMTHIAVERNRRKQMNEHLAILRSLMPDS---YAQRGDQASIVGGAIEFVKELE 167
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-17114185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-12114171No hitNo description
PROSITE profilePS5088815.389115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14116180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-12116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTMALEALTS NEPFNFIIYD TISATPYSFQ DSSGTTSNFI PPDKNFCTST SSMKSDQDTQ  60
IKRALNLEAA AAGGGGRQKQ SSLGVNNNNA QQQQQGRKKR RRKPRVCKNK EEAETQRMTH  120
IAVERNRRKQ MNEHLAILRS LMPDSYAQRG DQASIVGGAI EFVKELEHLL HSLEAQKLQL  180
LHNADVSTST SKPAQTPFAQ LLECPQYTWS HCPNKFTSKT KAAIADIEVT LIETHANLKI  240
MSRRISPRQL SKLVGGIQSL QLTILHLTVT TMDPFVLYSI SVKIEEGCLL SSVDDIATAI  300
HHMLRVIEEA ATLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102RKKRRRK
296103RKKRRRKP
397102KKRRRK
4116127RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G033300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210615.20.0transcription factor bHLH71
SwissprotQ9C7T44e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A251P3860.0A0A251P386_PRUPE; Uncharacterized protein
STRINGEMJ118140.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]