PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G031700.1.p
Common NamePRUPE_ppa019280mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 327aa    MW: 36532.9 Da    PI: 6.8468
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G031700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-191562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WTteEde+l d+++++G g+W++ ++  g++R++k+c++rw +yl
  Prupe.5G031700.1.p 15 KGPWTTEEDEKLMDYIARHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding50.54.9e-1668113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++++E+  +++++   G++ W++Ia +++ gRt++++k++w+++l
  Prupe.5G031700.1.p  68 RGKFSEDEERVIINLHSVVGNK-WSKIATHLP-GRTDNEIKNYWNTHL 113
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-25765IPR009057Homeodomain-like
PROSITE profilePS5129417.4941062IPR017930Myb domain
SuperFamilySSF466891.84E-3112109IPR009057Homeodomain-like
SMARTSM007173.5E-141464IPR001005SANT/Myb domain
PfamPF002493.1E-171562IPR001005SANT/Myb domain
CDDcd001679.41E-111762No hitNo description
PROSITE profilePS5129427.82863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2666117IPR009057Homeodomain-like
SMARTSM007171.0E-1567115IPR001005SANT/Myb domain
PfamPF002491.0E-1468113IPR001005SANT/Myb domain
CDDcd001671.65E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRSPSCDEQ SGLKKGPWTT EEDEKLMDYI ARHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEDEERVII NLHSVVGNKW SKIATHLPGR TDNEIKNYWN THLRKKLLHM  120
GIDPNTHKPR TDLNQLLNLS QLLRAANVGQ MNMSSWDNAL SLRLQAGAAQ LAKMQLLQHL  180
CMQVVNSSSS AAAAPPPPLP NIDMMSTFGY QNLNQFGGQA NSLEGFEGHN NSNNNNNNNI  240
PTFDNNMSNY YEDMLQTKNP FPALVSASPG TSCNTNTNQM ENSMSGDPAA DCFSTHSPTT  300
IFEAWEKLMD DETSESYWKD ILESIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29131175108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G031700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210649.20.0transcription factor MYB39
SwissprotQ8GWP03e-84MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A251P2Z30.0A0A251P2Z3_PRUPE; Uncharacterized protein
STRINGEMJ118480.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-86myb domain protein 9