PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G031100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 517aa    MW: 56261.5 Da    PI: 4.4162
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G031100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.6e-36411322102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Prupe.5G031100.1.p  41 FLSKTYDMVDDPATDQVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 122
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Prupe.5G031100.1.p 123 LLKSINRRKP 132
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-4035125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-6437130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-3637130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.2E-214164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-217991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-2192104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGGANNNCDE ASMAGGGGGA QQAGLAPAPA PLLNSNAPPP FLSKTYDMVD DPATDQVVSW  60
SPTNNSFVVW NPPEFARDLL PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ  120
KHLLKSINRR KPAHGHGHQQ PQPSQGQNSV AACVEVGKFG LEEEVERLKR DKNVLMQELI  180
KLRQQQQSTD NQLQAMVQRL LGMEQRQQQM MSFLAKAVQS PSFLTQFVQQ QNESNRRIIE  240
VNKKRRLKQD EGGDSGTPDG QIVKYQPPVN EAAKAMLRQI MTTDTSSRLE SFNDSPDKFP  300
IGNGSSSSSS LIDSGSSSSR ASGVTLQEVP LTSGLGSSSA ISEVQSSLQA TNSGTVMRSP  360
FSDINALVGA QEAQSIPISQ ADVIIPELSQ IPEMVPESLV DIPEENMGPD AGVGFIENMA  420
SDASDGFIGD ILGLDGSMTI DIDSIPPDPD IEALLKNWDQ FLQSPEPDEM DSTYAEGVPM  480
GNEEQPSTEN GWDKTQHNMD NLTEKMGRLT SDTKGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-273913027129Heat shock factor protein 1
5d5v_B2e-273913027129Heat shock factor protein 1
5d5v_D2e-273913027129Heat shock factor protein 1
5hdg_A1e-27391308110Heat shock factor protein 1
5hdn_A1e-27391308110Heat shock factor protein 1
5hdn_B1e-27391308110Heat shock factor protein 1
5hdn_C1e-27391308110Heat shock factor protein 1
5hdn_D1e-27391308110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241248NKKRRLKQ
2242247KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G031100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419290.10.0heat shock factor protein HSF8
SwissprotQ401521e-176HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A251P4J90.0A0A251P4J9_PRUPE; Uncharacterized protein
STRINGXP_008238205.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-137heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]