PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G029000.1.p
Common NamePRUPE_ppa014792mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 832aa    MW: 92217.3 Da    PI: 5.4154
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G029000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-2193148156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e+lF+++++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  Prupe.5G029000.1.p  93 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSQELGLKPRQVKFWFQNRRTQMK 148
                         688999***********************************************998 PP
2START161.56.3e-512955222206
                         HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
               START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla 77 
                         la +  +elvk+ +a+ep+W + s    e +n +e+++ f++              +++ea r+s+vv+m++ +lv  +ld + +W e ++
  Prupe.5G029000.1.p 295 LAASSVDELVKMCQAGEPLWIRNSeigkEVLNVKEYTRMFPP--WplnlkhhssdqFRTEATRDSAVVIMNSINLVDCFLDAN-KWMELFP 382
                         6788899*****************666666666666666655..15699999***99**************************.******* PP

                         ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
               START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                             +a+t++vi+ +      g lqlm+aelq lsplvp R+  f+Ry++q  ++g w+ivd  +ds  ++  +ss+ R ++lpSg+li++
  Prupe.5G029000.1.p 383 sivsRAKTVQVIQADpsgqanGSLQLMYAELQILSPLVPtREAHFLRYCQQnAEEGCWAIVDFPIDSFHDNL-QSSFPRYKRLPSGCLIQD 472
                         ***************************************************999****************98.9***************** PP

                         ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         ++ng+sk+twveh++ +++ +h++l + + sg+a+ga++w+a lqrqce+
  Prupe.5G029000.1.p 473 MPNGYSKITWVEHAEIEEKPVHQILSHYIYSGMAFGAQRWLAILQRQCER 522
                         ************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.08E-2082151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-2188155IPR009057Homeodomain-like
PROSITE profilePS5007117.37890150IPR001356Homeobox domain
SMARTSM003891.9E-2091154IPR001356Homeobox domain
CDDcd000866.12E-2093151No hitNo description
PfamPF000464.7E-1993148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084845.627285525IPR002913START domain
SuperFamilySSF559612.61E-34286524No hitNo description
CDDcd088752.72E-119289521No hitNo description
SMARTSM002342.6E-35294522IPR002913START domain
PfamPF018524.4E-43295522IPR002913START domain
SuperFamilySSF559612.61E-15557718No hitNo description
SuperFamilySSF559612.61E-15754792No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MYGDCQVMST MGGGNVVTSE TLFSSPIQNP NFNFMPSQLP FQPFSSIINP KEENGLLMRG  60
KEEMMESGSG SEQVEEKSGN EQEADQLQQP PKKKRYHRHT AHQIQEMENL FKECPHPDDK  120
QRQKLSQELG LKPRQVKFWF QNRRTQMKAQ QDRSDNVMLR AENDSLKNEN YRLQTALRNI  180
ICPNCGGPSM IADIGLDEQQ LRLENARLRE ELERVCCLSS RYTTGRQIQT MAPGDPLMSA  240
SSLDLDMNIY SRHFQDPMTS CGDMIPMPLL PPEVPSHYNE GGVLLDEEKS LAVELAASSV  300
DELVKMCQAG EPLWIRNSEI GKEVLNVKEY TRMFPPWPLN LKHHSSDQFR TEATRDSAVV  360
IMNSINLVDC FLDANKWMEL FPSIVSRAKT VQVIQADPSG QANGSLQLMY AELQILSPLV  420
PTREAHFLRY CQQNAEEGCW AIVDFPIDSF HDNLQSSFPR YKRLPSGCLI QDMPNGYSKI  480
TWVEHAEIEE KPVHQILSHY IYSGMAFGAQ RWLAILQRQC ERVASLMARN ISDLGVIPSP  540
EARKNLMKLS QRMIRTFCVN MSTSNGQSWT ALSDSPDDTV RITTRKVTDP GQPIGVILSA  600
VSTTWLPYSH YRVFELLRDE HRRAQLDVLS NGNSLHEVAH IANGSHPGNC ISLLRINVAS  660
NSAQNVELML QESCTDESGS LVVYTTMDVD GIQLAMSGED PSCIPLLPLG FVIVPLHPME  720
STGPTPNHLT SSSPDHRQED STATTTTTSN VINSGCLLTV GLQVLASTSP SAKLNLSSVT  780
AINNHLCNSV QQIISALSSG SDTCIAAATT ENGSVGGGAS CSDPTASSPR Q*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G029000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209851.10.0homeobox-leucine zipper protein HDG5 isoform X2
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLM5WW920.0M5WW92_PRUPE; Uncharacterized protein
STRINGEMJ110500.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]