PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G010000.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 881aa MW: 99429.1 Da PI: 6.5155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G010000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.5	3.8e-17	62	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GFs ++ +s++sk +g+++ r+fvC +eg ++++ ++ C+a+l+++++ ++kw+ tk+++eH+H+l+ Prupe.5G010000.1.p 62 FYDEYARRLGFSSKVGQSSRSKPDGTTIAREFVCGREGLKRRHADS--------------CDAMLRIELKGQDKWVSTKFVKEHSHALV 136 9************************************9998777..............*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-14	62	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-29	273	364	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.93	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-10	558	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MDVEVIDVEG MGHRGMADDG DAERSEGGEV NNAENSEAHD EDGISEPYVG MEFNSEEAAK 60 TFYDEYARRL GFSSKVGQSS RSKPDGTTIA REFVCGREGL KRRHADSCDA MLRIELKGQD 120 KWVSTKFVKE HSHALVSPGK VHYLRPRRHF AGAAKNVAET YQGVGIVPSG VMYVSVDGNR 180 TPVEKSRVVR NTLSTESNRP VKNAITMNQL RPCSRRSTLG KDAQNLLEYF KKMQAENPGF 240 FYAIQLDEDN HMANVFWADA RSRAAYCHFG DAVTLDTTYR VNQYRVPFAP FTGVNHHGQT 300 VLFGCALLLD ESEASFIWLF KTFLTAMNDC HPVSFMTDQD RAIQTAVSQV FPEVRHCISK 360 SHVLREGQER LAHVCQAHPY FEVELYNCIN LTETIEEFEL SWDSILDKYD LRRNDWLQSL 420 YSARAQWVPV YFRDSFSAAI SPKPNQGHDG FFDGYVNQQT TLPMFFRQYE RALENSFERE 480 IEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF 540 RVAKFEDDHK AYIVTFNYPE MRANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSHYILKR 600 WTRNAKSGTT LDERSGELHG QDSLTLRYNN LCREAIKYAE DGATTTETFI AAMTALRDGG 660 KKVSVVKKNV AKVAPPNSQV SVTGYDDRKN STSMSDMTPL LWPRQDEVMK RFNLNDAGAP 720 AQTVSDLNLP RMAPVSLHRD DGTPENMVVL PCLKSMTWVM ENKNSAPGNR VAVINLKLQD 780 YSRTISTESE VKFQLSRVSL EPMLRSMAYI SDQLSTPANK VAVINLKLQD AETTSGESEV 840 KFQVSRDTLG AMLRSMAYIR EQLSSAAEIQ SESVSKKLRK *

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MDVEVIDVEG MGHRGMADDG DAERSEGGEV NNAENSEAHD EDGISEPYVG MEFNSEEAAK  60
TFYDEYARRL GFSSKVGQSS RSKPDGTTIA REFVCGREGL KRRHADSCDA MLRIELKGQD  120
KWVSTKFVKE HSHALVSPGK VHYLRPRRHF AGAAKNVAET YQGVGIVPSG VMYVSVDGNR  180
TPVEKSRVVR NTLSTESNRP VKNAITMNQL RPCSRRSTLG KDAQNLLEYF KKMQAENPGF  240
FYAIQLDEDN HMANVFWADA RSRAAYCHFG DAVTLDTTYR VNQYRVPFAP FTGVNHHGQT  300
VLFGCALLLD ESEASFIWLF KTFLTAMNDC HPVSFMTDQD RAIQTAVSQV FPEVRHCISK  360
SHVLREGQER LAHVCQAHPY FEVELYNCIN LTETIEEFEL SWDSILDKYD LRRNDWLQSL  420
YSARAQWVPV YFRDSFSAAI SPKPNQGHDG FFDGYVNQQT TLPMFFRQYE RALENSFERE  480
IEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF  540
RVAKFEDDHK AYIVTFNYPE MRANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSHYILKR  600
WTRNAKSGTT LDERSGELHG QDSLTLRYNN LCREAIKYAE DGATTTETFI AAMTALRDGG  660
KKVSVVKKNV AKVAPPNSQV SVTGYDDRKN STSMSDMTPL LWPRQDEVMK RFNLNDAGAP  720
AQTVSDLNLP RMAPVSLHRD DGTPENMVVL PCLKSMTWVM ENKNSAPGNR VAVINLKLQD  780
YSRTISTESE VKFQLSRVSL EPMLRSMAYI SDQLSTPANK VAVINLKLQD AETTSGESEV  840
KFQVSRDTLG AMLRSMAYIR EQLSSAAEIQ SESVSKKLRK *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.6639	7e-72	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G010000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007211309.2	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A251P1K9	0.0	A0A251P1K9_PRUPE; Uncharacterized protein
STRING	XP_008237973.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Prupe.5G010000.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]