PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G009600.2.p | ||||||||
Common Name | PRUPE_ppa011225mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 215aa MW: 24793.9 Da PI: 5.679 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.2e-21 | 100 | 160 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+ Fe+ + +p +++++e++++l +++e++V++WFqNrRa+ k+ Prupe.5G009600.2.p 100 RQRWTPTPVQLQMLERIFEEgTGTPCKQKIKEITMELtqhgQISETNVYNWFQNRRARSKR 160 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101 | 8.7e-33 | 99 | 162 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q+++Le+++++G+ tP k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Prupe.5G009600.2.p 99 ARQRWTPTPVQLQMLERIFEEGTGTPCKQKIKEITMELTQHGQISETNVYNWFQNRRARSKRKQ 162 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-17 | 94 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.317 | 96 | 161 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-13 | 98 | 165 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.57E-17 | 99 | 163 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-18 | 100 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.58E-13 | 100 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MMEWQQQQQQ QIQNQQQIIH HLQNPEDGIG NGNGGLYVKV MTDEQMELLR RQIAVYATIC 60 EQLVEMHKAV TAQQDLTGMR LGNFYCDPFM ASGGHKITAR QRWTPTPVQL QMLERIFEEG 120 TGTPCKQKIK EITMELTQHG QISETNVYNW FQNRRARSKR KQSVPAQNNG ESEAEPEVES 180 PRDEKTKPED IMSLDNSAPR AENMYLQSPE IWKF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 161 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G009600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020420142.1 | 1e-157 | WUSCHEL-related homeobox 13 isoform X1 | ||||
Swissprot | Q5QMM3 | 1e-77 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A251P1J8 | 1e-159 | A0A251P1J8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10785 | 1e-156 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-75 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G009600.2.p |
Entrez Gene | 18777489 |
Publications ? help Back to Top | |||
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