PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G009600.1.p

Common Name

PRUPE_ppa011225mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

WOX

Protein Properties

Length: 219aa MW: 25156.2 Da PI: 5.1414

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G009600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.5e-21	100	160	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+ Fe+ + +p +++++e++++l +++e++V++WFqNrRa+ k+ Prupe.5G009600.1.p 100 RQRWTPTPVQLQMLERIFEEgTGTPCKQKIKEITMELtqhgQISETNVYNWFQNRRARSKR 160 89***************99************************************97 PP
2	Wus_type_Homeobox	100.9	9e-33	99	162	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q+++Le+++++G+ tP k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Prupe.5G009600.1.p 99 ARQRWTPTPVQLQMLERIFEEGTGTPCKQKIKEITMELTQHGQISETNVYNWFQNRRARSKRKQ 162 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-17	94	164	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.317	96	161	IPR001356	Homeobox domain
SMART	SM00389	9.9E-13	98	165	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.65E-17	99	163	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-18	100	160	IPR001356	Homeobox domain
CDD	cd00086	3.64E-13	100	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MMEWQQQQQQ QIQNQQQIIH HLQNPEDGIG NGNGGLYVKV MTDEQMELLR RQIAVYATIC 60 EQLVEMHKAV TAQQDLTGMR LGNFYCDPFM ASGGHKITAR QRWTPTPVQL QMLERIFEEG 120 TGTPCKQKIK EITMELTQHG QISETNVYNW FQNRRARSKR KQSVPAQNNG ESEAEPEVES 180 PRDEKTKPED IMSLDNSAPR AENMYLQSPE LGFGNFDW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	161	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G009600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209586.1	1e-164	WUSCHEL-related homeobox 8 isoform X2
Swissprot	Q5QMM3	2e-77	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M5WVH2	1e-163	M5WVH2_PRUPE; Uncharacterized protein
STRING	EMJ10785	1e-164	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-75	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Prupe.5G009600.1.p
Entrez Gene	18777489

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]