PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G003600.1.p | ||||||||
Common Name | PRUPE_ppa026999mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 764aa MW: 87037.7 Da PI: 6.2206 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 99.4 | 3.7e-31 | 81 | 168 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r++tr+gCka+++vkk+++g+w v+kl++eHnHel+p Prupe.5G003600.1.p 81 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQVVCSREGFRRDGGEN--RSKRQRTVTRVGCKAQMTVKKQSSGRWAVSKLVKEHNHELVP 168 9*****************************************9988..999*************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-28 | 81 | 168 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.1E-30 | 289 | 380 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.301 | 569 | 605 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.5E-10 | 575 | 603 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-8 | 580 | 607 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MDFEPLNIEN EAVEFDMGGS GDDDATALDL EHPDDSYDIF DDDLVQSSNS TRSRDDLASG 60 DPNLEPYEGM EFDSEQASRI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QVVCSREGFR 120 RDGGENRSKR QRTVTRVGCK AQMTVKKQSS GRWAVSKLVK EHNHELVPPD KVHCLRSHRH 180 VSGPARSLID TLQAAGMGPS GVMSVLIKES GGINNVGFTK VDCQNYMSSS RQRTLGSGGQ 240 FVFDYLKRMQ AEDPGFFFAV QGDFENLTGN IFWADSNSRM NYDYFGDTVT FDTTYRTNRY 300 RVPFAPFTGW NHHGQPVLFG CSLLLNESES SFVWLFQTWL AAMSTRHPVS ITTDQDRIIR 360 AAVGQVFPGT RHRFCKWNVL REAQEKLSDV YHSHPTFEAE FQRCINMTET IDEFESCWES 420 LLQRYDIGDN EWLQSMYDAR QQWVPVFLRD TFFGEMSVTQ GSDNINSYFD GYINASTNIQ 480 VLIKQYEKAI ATRHEKEVKA DYDTMNISPI LRTPSPMEKQ AAKLYTRVVF MKFQEELVET 540 LAYPATMVDD TGSETVYRVA KFGEDHKVYF VRFNVFEKKS SCSCQMFEFS GIICRHILAV 600 FRVTNVLTLP NHYILKRWTK NAKSGVVWDE HTLGLPNDSQ DSSAARYDNL RREAIKYVEE 660 GAESVRVYNV AMDALHEAAS EVTAAKKHGL GVVQSTSINC SQQLQSCTVD QDKKIKELAA 720 ELDIASQQCE AYRAKLLAIL KDMEEQKLKI SVNVRNVRLN LRS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G003600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208906.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | M5WTJ3 | 0.0 | M5WTJ3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10105 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G003600.1.p |
Entrez Gene | 18777115 |
Publications ? help Back to Top | |||
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