PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G273800.1.p | ||||||||
Common Name | PRUPE_ppa027072mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-YB | ||||||||
Protein Properties | Length: 231aa MW: 25922.5 Da PI: 6.6766 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 179.4 | 3.3e-56 | 43 | 138 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyv+plk+yl+kyre Prupe.4G273800.1.p 43 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVHPLKLYLQKYRE 133 89***************************************************************************************** PP NF-YB 93 legek 97 legek Prupe.4G273800.1.p 134 LEGEK 138 **996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.8E-55 | 36 | 169 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.25E-41 | 45 | 162 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-28 | 48 | 112 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.0E-20 | 76 | 94 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 79 | 95 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.0E-20 | 95 | 113 | No hit | No description |
PRINTS | PR00615 | 2.0E-20 | 114 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEDERLNGPS GGSPENPCGV KSSASSNNNN GNSTYNNNNN SNKEQDRFLP IANVGRIMKK 60 VIPGNGKISK DAKETVQECV SEFISFVTGE ASDKCQREKR KTINGEDIIW AITTLGFEDY 120 VHPLKLYLQK YRELEGEKLN VPKQQRLEQR QLQQHQQNHH HQQPEQQEQQ TLVSAYDNSV 180 YSSTNLLSQP SFIAAAAADH HQTAFSLPFS PTSIQKQLHP QDHIDSVGHW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 2e-46 | 41 | 133 | 1 | 93 | NF-YB |
4awl_B | 2e-46 | 41 | 133 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 2e-46 | 41 | 133 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G273800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007214389.1 | 1e-173 | nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 7e-73 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | M5X220 | 1e-172 | M5X220_PRUPE; Uncharacterized protein | ||||
STRING | EMJ15588 | 1e-172 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13249 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 4e-65 | nuclear factor Y, subunit B7 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G273800.1.p |
Entrez Gene | 18779972 |
Publications ? help Back to Top | |||
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