PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G271500.1.p | ||||||||
Common Name | PRUPE_ppa026304mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 19734.3 Da PI: 4.9086 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 69.2 | 9.3e-22 | 2 | 89 | 14 | 100 |
DUF260 14 kdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++C++apyf +e+ +f + +FGa++++k+l++lp +er+ + +++ eA+ar dP+yG+++ il+lqqq+++ +a+l++++ + Prupe.4G271500.1.p 2 TGCIFAPYFMHEEaVTDFSSICNVFGANKMSKILSQLPMSERSVTSWTMAVEAHARDIDPIYGCISYILHLQQQVRNIQAQLDEAHVQ 89 57*******9988569******************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.227 | 1 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.4E-21 | 2 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MTGCIFAPYF MHEEAVTDFS SICNVFGANK MSKILSQLPM SERSVTSWTM AVEAHARDID 60 PIYGCISYIL HLQQQVRNIQ AQLDEAHVQL ARAVAPVANP NQDLENSNEQ SEVANPTEQA 120 AVAKPTEFES LPQFSLTHTN NGDQRCLSPI VFFLVVILDQ PSGQTFQIRK TLHVWTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-21 | 1 | 92 | 23 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-21 | 1 | 92 | 23 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G271500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235796.1 | 1e-32 | PREDICTED: LOB domain-containing protein 29-like | ||||
TrEMBL | A0A251PT51 | 1e-130 | A0A251PT51_PRUPE; Uncharacterized protein | ||||
STRING | EMJ14595 | 1e-129 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 4e-29 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G271500.1.p |
Entrez Gene | 18780849 |