PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G268600.1.p
Common NamePRUPE_ppa015049mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 162aa    MW: 19103.1 Da    PI: 9.4369
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G268600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.91.4e-2239124188
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         kfYn+YA+++GFs+r+s+ +k  ++g+  +r fvC  egkre +k+  ++ + +raetr+gC a++k++ + ++k++v++++ eHnH 
  Prupe.4G268600.1.p  39 KFYNAYAYNIGFSIRRSSCHKF-KSGQLRDRLFVCFTEGKREIDKRV-SNVKYHRAETRCGCLARMKISCHLNEKYRVIEFVYEHNHM 124
                         6********************9.6777****************9988.89999**********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1839124IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MNMDNNCMED GEDLVHLSIR KQLIPVIGME FETEDLAFKF YNAYAYNIGF SIRRSSCHKF  60
KSGQLRDRLF VCFTEGKREI DKRVSNVKYH RAETRCGCLA RMKISCHLNE KYRVIEFVYE  120
HNHMTTSSSK THLFRSHKKI TYHIRSSWVM LNNTIIILNQ P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G268600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021817174.17e-87protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251PRJ71e-117A0A251PRJ7_PRUPE; Uncharacterized protein
TrEMBLM5X1031e-117M5X103_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ152431e-118(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1-related sequence 5