PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G267200.1.p | ||||||||
Common Name | PRUPE_ppa017162mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SRS | ||||||||
Protein Properties | Length: 426aa MW: 43709.4 Da PI: 8.0499 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 221 | 2.5e-68 | 206 | 366 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92 + t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + aa a +++ +++++k++r l ++q+++s+t++s Prupe.4G267200.1.p 206 ASTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSGAAGGGAGSNSgSTSSAKKPR-LIGASQTTTSHTSTS 295 5789************************************************99999999998884445555555.5699999******** PP DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++++++ +tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e Prupe.4G267200.1.p 296 NTTPPRSYDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGVE 366 **********999********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.1E-62 | 208 | 366 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.8E-27 | 210 | 252 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.9E-30 | 318 | 365 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MWPSSGPPSR PLPYSHLPPE MAGMVGLRDV FVVAPAAAYH HNNHHHLHHH HHDPNLLSPS 60 SDPHHSINAS TNPATALGVG VGVGVIPLLT TTPCLAPPNI SNVDDDEDNN AHTPTGMSMG 120 MGMGMGMGMG MSMSMGMMSS GQHRNNRSAG GGGGIQLWQQ PQPHFFKKTP HDLAATSLGG 180 THLVQGGGGG VGNNVMNSGS AAASGASTMT CQDCGNQAKK DCTHRRCRTC CKSRGFDCAT 240 HVKSTWVPAA RRRERQLMSG AAGGGAGSNS GSTSSAKKPR LIGASQTTTS HTSTSNTTPP 300 RSYDTSSSHQ DAGFKESLPG QVRAPAVFKC VRVTAVEDGD DEYAYQAVVK IGGHVFKGFL 360 YDQGVEGREG FPNISELHLG GGGGTSGGGN GGRNGASSPI LDSSDVYGAS SGGLLGGSNF 420 GNPIN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G267200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418667.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | M5WND7 | 0.0 | M5WND7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ15224 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 1e-74 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G267200.1.p |
Entrez Gene | 18781220 |