PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G265400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 512aa MW: 59435.8 Da PI: 8.7079 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.2 | 7.4e-25 | 133 | 218 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA vGFsvrk + +k +ng i kr+f+Cs+eg+ +++++ +++r++ r gCka+l +k+++dgk++v++++ eHnH+l+p Prupe.4G265400.1.p 133 QYYNSYAIGVGFSVRKLRVNKD-KNGVIHKREFCCSCEGFYRKKTTP----KKKREQRRFGCKAMLGIKLNRDGKYVVKNFVAEHNHDLVP 218 69****************9998.8999*************9998777....899999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-21 | 133 | 218 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-17 | 352 | 420 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MPPLAMRSWN GRTRVKLREK LRLELELAKA DAVESLEAAA VEEIKLHREW VNGLVVVTAP 60 EVLILELETH LTGAFEANNS KAEVCRPTKM VGKEPLKVLI SWIIMSKIEE LTRKFGDVPT 120 LGMSFDNEQE AYQYYNSYAI GVGFSVRKLR VNKDKNGVIH KREFCCSCEG FYRKKTTPKK 180 KREQRRFGCK AMLGIKLNRD GKYVVKNFVA EHNHDLVPLS SSHLLRSQRT IEPCQAGFIN 240 QMHHAGLKPS QIFSYMTTEA RGPQHLNFIQ AYCNNLIMRK RTEFQNRGDS QCLLEYFKQK 300 QAQDKSFFYS IQTNMETESV VVFCVMETQD VIMLYLVIIC VLIRHSKRTT TTWYILFGCG 360 LLDGESTNAC EWLFKVFLQA NERKEPKTIF TDHAQSIAAA IIEVFPNCHN RLCLWHIYQN 420 VARNLGHVFY EFQAFAKDFK SCVYDPEIVE EFESSWEALL DDYGLRGNSW LEGIYALREK 480 WNFCSLFTLC QSNYRLIVLQ RLRKLIYLHV R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G265400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224311.2 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A251PRG0 | 0.0 | A0A251PRG0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ14432 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22182 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 9e-65 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G265400.1.p |