PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G258200.1.p
Common NamePRUPE_ppa005243mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 472aa    MW: 52583.6 Da    PI: 5.9961
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G258200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.47.8e-143464681374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++v++g+le+a+ +L+++s+las dgd+mqR+aayfteALa r+++ +++l +al++++ s   +see+ ++k+f+e+ P+l
  Prupe.4G258200.1.p  46 LIHLLLTCANHVATGSLENANVALEQISQLASADGDTMQRIAAYFTEALADRILKAWPGLHRALNSTKIS--LVSEEFLVRKVFFEMLPFL 134
                         689*************************************************************999998..79***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k+++++aNqaI ea+ege++vH+iD+++ +++QW+aLlq L++Rpegpp+lRiTgv++    +ke l ++++rL++ Ae+l++pf+f + +
  Prupe.4G258200.1.p 135 KVAFVLANQAITEAMEGEKMVHVIDLNAAEPAQWIALLQVLSARPEGPPHLRITGVHQ----QKEVLDQMAHRLTEEAEKLDIPFQFCP-I 220
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll......................................................desvs 219
                         +++le+l++e+Lr+k+gEala+++vlqlh+ll                                                      ++++s
  Prupe.4G258200.1.p 221 VSKLENLDMEKLRIKTGEALAISSVLQLHSLLasddellkkksplasksssgiplprvlqmnqgtlgellekemgngygaspdstsSSPLS 311
                         999********************************************************************************99944444 PP

                GRAS 220 les..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                         l+   + d++L++++sl Pkv+v++eq+++hn+++++er+leal+ y+alfd+le++++r+s er kvE++l+g+ei+n++aceg er+er
  Prupe.4G258200.1.p 312 LTAsmKLDSFLNAFWSLTPKVMVIAEQDSNHNGSTLMERLLEALYSYAALFDCLESTMSRNSIERLKVEKMLFGEEIKNIIACEGCERKER 402
                         444447799********************************************************************************** PP

                GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         he+lekW +rl+ aGF++vpls++ + qak+ll+ ++ dgyr+ ee+g++++ W+drpL+svSaWr
  Prupe.4G258200.1.p 403 HEKLEKWIQRLDLAGFGNVPLSYYGMLQAKRLLQGYGCDGYRMREENGCVLISWQDRPLFSVSAWR 468
                         *****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.86120448IPR005202Transcription factor GRAS
PfamPF035142.7E-14046468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MFQDEGSSSA TSSPLQFFSM MSLSPSLGSP HPWLKELKSE ERGLYLIHLL LTCANHVATG  60
SLENANVALE QISQLASADG DTMQRIAAYF TEALADRILK AWPGLHRALN STKISLVSEE  120
FLVRKVFFEM LPFLKVAFVL ANQAITEAME GEKMVHVIDL NAAEPAQWIA LLQVLSARPE  180
GPPHLRITGV HQQKEVLDQM AHRLTEEAEK LDIPFQFCPI VSKLENLDME KLRIKTGEAL  240
AISSVLQLHS LLASDDELLK KKSPLASKSS SGIPLPRVLQ MNQGTLGELL EKEMGNGYGA  300
SPDSTSSSPL SLTASMKLDS FLNAFWSLTP KVMVIAEQDS NHNGSTLMER LLEALYSYAA  360
LFDCLESTMS RNSIERLKVE KMLFGEEIKN IIACEGCERK ERHEKLEKWI QRLDLAGFGN  420
VPLSYYGMLQ AKRLLQGYGC DGYRMREENG CVLISWQDRP LFSVSAWRCR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-55304702380Protein SCARECROW
5b3h_D7e-55304702380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.53608e-98fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G258200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211403.20.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLM5WFN20.0M5WFN2_PRUPE; Uncharacterized protein
STRINGEMJ126020.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]