PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G256500.1.p
Common NamePRUPE_ppa023217mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 716aa    MW: 84004.4 Da    PI: 8.4726
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G256500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.81.6e-1739124291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +Y+eY+k++GF vrk++s+k  ++ge +  t  C +egk ++++++     +++++ ++gCka+++     dg+w++++++l+HnH+++p
  Prupe.4G256500.1.p  39 YYREYGKQLGFPVRKRTSQKG-DEGELKYVTISCGREGKYKSKSSN---VLKPHPSIKIGCKARVRAGIILDGRWQINSINLDHNHDMSP 124
                         8***************99998.8888***************99888...899**********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1439124IPR004330FAR1 DNA binding domain
PfamPF105511.5E-37244337IPR018289MULE transposase domain
PfamPF044347.0E-7529563IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.336529565IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-6540567IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MEKNDGEAVS EEPELENREN VEEPRVGMTF NNIDDIVVYY REYGKQLGFP VRKRTSQKGD  60
EGELKYVTIS CGREGKYKSK SSNVLKPHPS IKIGCKARVR AGIILDGRWQ INSINLDHNH  120
DMSPTKARYF RCHRTISSYM KRRIELNDRA GIRLNKSYNS LVVEAGGHEN ISFLEKDCRN  180
YIENVRRLRL GEGDATAIQT YFLNMQAQNS NFFYAIDLDQ DGRLRNVFWA DARSRAAYKE  240
FGDVVTFDTT YLTNKYDMPF APFVGVNHHG QSILLGCGLI SSEDTDAFIW LFKSWLTCMH  300
EHAPRGIITD QDKAMKNAIE IIFPNTRHRW CLWHIMNKFP SKLNRYKQYE AIMYALQSIV  360
YGSLEKVEFE EGWDEIIEKY ELQDNEWLAG LYNERQRWVP YFVKDSFWAG MSTTQRSESM  420
NAFFDDHVNS KTTLKQFVEQ YENALKVKVE KEKQEDFKSS SIGFDCGTHY NMEKQAQEVY  480
TISKYKEFHE ELIGKMYCDY VSHKVNGANF EYQISEDFMM EGKKKRLYFK VWLNEDDNEV  540
QCNCRMFEFR GILCRHTIYV FLRHNIDLIP EKYIMRRWRK DVKRCHTRIE INYESYSLAP  600
EAQRCHKMQK AFDEIKELAN DSDNKCMIVM TWMDNSPIGR NIENDVSSIP NASQCILTPL  660
AARKKGRPPF KRRKSQLEQA VRKKQDSKKK KQESNKKIKS CGNNTNGEKE LNVCN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1671690RRKSQLEQAVRKKQDSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G256500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417960.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLM5WNR60.0M5WNR6_PRUPE; Uncharacterized protein
STRINGEMJ154170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-130FAR1-related sequence 5