PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G233000.6.p
Common NamePRUPE_ppa004136mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 539aa    MW: 59439.2 Da    PI: 4.9984
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G233000.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.82.4e-1351685381374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+e+L +cA+a++++d++ ++ l+++l++++s +g+p+qRl ay++e+L arla+s+s +y+al+++e +   s+e l+++++++e++P++
  Prupe.4G233000.6.p 168 LKEVLCACAKALANSDMSTTELLMSNLRQMVSVSGEPIQRLGAYMLEGLVARLASSGSAIYAALRCKEPA---SAELLSYMHILYEICPYF 255
                         5789*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e+rvHiiDf++ qG QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++
  Prupe.4G233000.6.p 256 KFGYMSANGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALAARPGGPPQIRITGIDDSTSAyaRGGGLGLVGQRLSRLAESCKVPFEFHA 346
                         **********************************************************998899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +  + ++++le+++v+pgEa+aVn++++lh+++desvs +++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+y+ a+fds+
  Prupe.4G233000.6.p 347 -AGISASEVQLENIEVRPGEAIAVNFAFMLHHMPDESVSCQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLPRFAETLSYFRAVFDSI 436
                         .7889************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++ lpre++eri+vE+++l+reivn++aceg er+er e l+kW++r+ +aGF+p+pls+ ++ ++k+ll+ ++++ y++ee++g+l+lgW
  Prupe.4G233000.6.p 437 DVALPREHKERINVEQHCLAREIVNIIACEGMERVERYELLSKWKSRFIMAGFSPYPLSSLVNGTIKTLLQSYSEK-YTLEERDGALYLGW 526
                         **************************************************************************65.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r Lv+ +aWr
  Prupe.4G233000.6.p 527 MNRVLVASCAWR 538
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.749142519IPR005202Transcription factor GRAS
PfamPF035148.1E-133168538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQESQKHIIP NVSHGCGEQP VEEPESYSWP PIPSVDHQAS SDEVIQGTQL SVQHLAQYCT  60
HESSSGTSTY HPVHSSPSSI GFSANGSPTS HPDLQNYQSC GSPVNQSCLS NDTDDLGHKM  120
RELESVLLGN DLDAFDMYAI TDELGPNQLS SEAENWEQMM EMISRGDLKE VLCACAKALA  180
NSDMSTTELL MSNLRQMVSV SGEPIQRLGA YMLEGLVARL ASSGSAIYAA LRCKEPASAE  240
LLSYMHILYE ICPYFKFGYM SANGAIAEAM KDESRVHIID FQVAQGSQWI TLIQALAARP  300
GGPPQIRITG IDDSTSAYAR GGGLGLVGQR LSRLAESCKV PFEFHAAGIS ASEVQLENIE  360
VRPGEAIAVN FAFMLHHMPD ESVSCQNHRD RLLRLVKSLS PKVVTLVEQE SNTNTAPFLP  420
RFAETLSYFR AVFDSIDVAL PREHKERINV EQHCLAREIV NIIACEGMER VERYELLSKW  480
KSRFIMAGFS PYPLSSLVNG TIKTLLQSYS EKYTLEERDG ALYLGWMNRV LVASCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-641725388375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G233000.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418688.10.0scarecrow-like protein 21 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A251PQ120.0A0A251PQ12_PRUPE; Uncharacterized protein
STRINGXP_008227106.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]